Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CFAP47 (cilia and flagella associated protein 47)

Identity

Alias_namesCXorf59
CXorf22
CXorf30
CHDC2
chromosome X open reading frame 59
chromosome X open reading frame 22
chromosome X open reading frame 30
calponin homology domain containing 2
Alias_symbol (synonym)FLJ36601
RP13-11B7.1
MGC34831
Other alias
HGNC (Hugo) CFAP47
LocusID (NCBI) 286464
Atlas_Id 76555
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 35919734 and ends at 36385319 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP47   26708
Cards
Entrez_Gene (NCBI)CFAP47  286464  cilia and flagella associated protein 47
AliasesCHDC2; CXorf22; CXorf30; CXorf59
GeneCards (Weizmann)CFAP47
Ensembl hg19 (Hinxton)ENSG00000165164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165164 [Gene_View]  chrX:35919734-36385319 [Contig_View]  CFAP47 [Vega]
ICGC DataPortalENSG00000165164
TCGA cBioPortalCFAP47
AceView (NCBI)CFAP47
Genatlas (Paris)CFAP47
WikiGenes286464
SOURCE (Princeton)CFAP47
Genetics Home Reference (NIH)CFAP47
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP47  -     chrX:35919734-36385319 +  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP47  -     Xp21.1   [Description]    (hg19-Feb_2009)
EnsemblCFAP47 - Xp21.1 [CytoView hg19]  CFAP47 - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBICFAP47 [Mapview hg19]  CFAP47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI648401 AI822140 AK093920 AK126295 BC027936
RefSeq transcript (Entrez)NM_001304548 NM_152632 NM_173695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP47
Cluster EST : UnigeneHs.742452 [ NCBI ]
CGAP (NCI)Hs.742452
Alternative Splicing GalleryENSG00000165164
Gene ExpressionCFAP47 [ NCBI-GEO ]   CFAP47 [ EBI - ARRAY_EXPRESS ]   CFAP47 [ SEEK ]   CFAP47 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286464
GTEX Portal (Tissue expression)CFAP47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTR5
Splice isoforms : SwissVarQ6ZTR5
PhosPhoSitePlusQ6ZTR5
Domaine pattern : Prosite (Expaxy)CH (PS50021)   
Domains : Interpro (EBI)CH-domain   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP47
DMDM Disease mutations286464
Blocks (Seattle)CFAP47
SuperfamilyQ6ZTR5
Human Protein AtlasENSG00000165164
Peptide AtlasQ6ZTR5
HPRD06561
IPIIPI00167801   IPI00552559   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTR5
IntAct (EBI)Q6ZTR5
FunCoupENSG00000165164
BioGRIDCFAP47
STRING (EMBL)CFAP47
ZODIACCFAP47
Ontologies - Pathways
QuickGOQ6ZTR5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCFAP47
Atlas of Cancer Signalling NetworkCFAP47
Wikipedia pathwaysCFAP47
Orthology - Evolution
OrthoDB286464
GeneTree (enSembl)ENSG00000165164
Phylogenetic Trees/Animal Genes : TreeFamCFAP47
HOVERGENQ6ZTR5
HOGENOMQ6ZTR5
Homologs : HomoloGeneCFAP47
Homology/Alignments : Family Browser (UCSC)CFAP47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP47
dbVarCFAP47
ClinVarCFAP47
1000_GenomesCFAP47 
Exome Variant ServerCFAP47
ExAC (Exome Aggregation Consortium)CFAP47 (select the gene name)
Genetic variants : HAPMAP286464
Genomic Variants (DGV)CFAP47 [DGVbeta]
DECIPHERCFAP47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP47 
Mutations
ICGC Data PortalCFAP47 
TCGA Data PortalCFAP47 
Broad Tumor PortalCFAP47
OASIS PortalCFAP47 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP47
BioMutasearch CFAP47
DgiDB (Drug Gene Interaction Database)CFAP47
DoCM (Curated mutations)CFAP47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP47 (select a term)
intoGenCFAP47
Cancer3DCFAP47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP47
Genetic Testing Registry CFAP47
NextProtQ6ZTR5 [Medical]
TSGene286464
GENETestsCFAP47
Target ValidationCFAP47
Huge Navigator CFAP47 [HugePedia]
snp3D : Map Gene to Disease286464
BioCentury BCIQCFAP47
ClinGenCFAP47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286464
Chemical/Pharm GKB GenePA145149062
Clinical trialCFAP47
Miscellaneous
canSAR (ICR)CFAP47 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP47
EVEXCFAP47
GoPubMedCFAP47
iHOPCFAP47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:25 CEST 2017

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