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CFAP57 (cilia and flagella associated protein 57)

Identity

Alias_namesWDR65
WD repeat domain 65
Alias_symbol (synonym)FLJ32000
Other aliasVWS2
HGNC (Hugo) CFAP57
LocusID (NCBI) 149465
Atlas_Id 61761
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43172330 and ends at 43210878 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP57   26485
Cards
Entrez_Gene (NCBI)CFAP57  149465  cilia and flagella associated protein 57
AliasesVWS2; WDR65
GeneCards (Weizmann)CFAP57
Ensembl hg19 (Hinxton)ENSG00000243710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243710 [Gene_View]  chr1:43172330-43210878 [Contig_View]  CFAP57 [Vega]
ICGC DataPortalENSG00000243710
TCGA cBioPortalCFAP57
AceView (NCBI)CFAP57
Genatlas (Paris)CFAP57
WikiGenes149465
SOURCE (Princeton)CFAP57
Genetics Home Reference (NIH)CFAP57
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP57  -     chr1:43172330-43210878 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP57  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblCFAP57 - 1p34.2 [CytoView hg19]  CFAP57 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBICFAP57 [Mapview hg19]  CFAP57 [Mapview hg38]
OMIM614259   
Gene and transcription
Genbank (Entrez)AK056562 BC117280 BC117306 BC143804 BU609144
RefSeq transcript (Entrez)NM_001167965 NM_001167966 NM_001195831 NM_152498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP57
Cluster EST : UnigeneHs.738994 [ NCBI ]
CGAP (NCI)Hs.738994
Alternative Splicing GalleryENSG00000243710
Gene ExpressionCFAP57 [ NCBI-GEO ]   CFAP57 [ EBI - ARRAY_EXPRESS ]   CFAP57 [ SEEK ]   CFAP57 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149465
GTEX Portal (Tissue expression)CFAP57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MR6
Splice isoforms : SwissVarQ96MR6
PhosPhoSitePlusQ96MR6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)CFAP57
DMDM Disease mutations149465
Blocks (Seattle)CFAP57
SuperfamilyQ96MR6
Human Protein AtlasENSG00000243710
Peptide AtlasQ96MR6
HPRD08717
IPIIPI00969184   IPI00043302   IPI00917906   IPI00984175   IPI00981153   
Protein Interaction databases
DIP (DOE-UCLA)Q96MR6
IntAct (EBI)Q96MR6
FunCoupENSG00000243710
BioGRIDCFAP57
STRING (EMBL)CFAP57
ZODIACCFAP57
Ontologies - Pathways
QuickGOQ96MR6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCFAP57
Atlas of Cancer Signalling NetworkCFAP57
Wikipedia pathwaysCFAP57
Orthology - Evolution
OrthoDB149465
GeneTree (enSembl)ENSG00000243710
Phylogenetic Trees/Animal Genes : TreeFamCFAP57
HOVERGENQ96MR6
HOGENOMQ96MR6
Homologs : HomoloGeneCFAP57
Homology/Alignments : Family Browser (UCSC)CFAP57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP57
dbVarCFAP57
ClinVarCFAP57
1000_GenomesCFAP57 
Exome Variant ServerCFAP57
ExAC (Exome Aggregation Consortium)CFAP57 (select the gene name)
Genetic variants : HAPMAP149465
Genomic Variants (DGV)CFAP57 [DGVbeta]
DECIPHERCFAP57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP57 
Mutations
ICGC Data PortalCFAP57 
TCGA Data PortalCFAP57 
Broad Tumor PortalCFAP57
OASIS PortalCFAP57 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP57
BioMutasearch CFAP57
DgiDB (Drug Gene Interaction Database)CFAP57
DoCM (Curated mutations)CFAP57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP57 (select a term)
intoGenCFAP57
Cancer3DCFAP57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614259   
Orphanet
MedgenCFAP57
Genetic Testing Registry CFAP57
NextProtQ96MR6 [Medical]
TSGene149465
GENETestsCFAP57
Target ValidationCFAP57
Huge Navigator CFAP57 [HugePedia]
snp3D : Map Gene to Disease149465
BioCentury BCIQCFAP57
ClinGenCFAP57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149465
Chemical/Pharm GKB GenePA142670598
Clinical trialCFAP57
Miscellaneous
canSAR (ICR)CFAP57 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP57
EVEXCFAP57
GoPubMedCFAP57
iHOPCFAP57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:26 CEST 2017

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