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CFAP58 (cilia and flagella associated protein 58)

Identity

Other aliasC10orf80
CCDC147
bA127L20.4
bA127L20.5
bA554P13.1
HGNC (Hugo) CFAP58
LocusID (NCBI) 159686
Atlas_Id 56673
Location 10q25.1  [Link to chromosome band 10q25]
Location_base_pair Starts at 106113522 and ends at 106214848 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP58   26676
Cards
Entrez_Gene (NCBI)CFAP58  159686  cilia and flagella associated protein 58
AliasesC10orf80; CCDC147; bA127L20.4; bA127L20.5; 
bA554P13.1
GeneCards (Weizmann)CFAP58
Ensembl hg19 (Hinxton) [Gene_View]  chr10:106113522-106214848 [Contig_View]  CFAP58 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:106113522-106214848 [Contig_View]  CFAP58 [Vega]
TCGA cBioPortalCFAP58
AceView (NCBI)CFAP58
Genatlas (Paris)CFAP58
WikiGenes159686
SOURCE (Princeton)CFAP58
Genetics Home Reference (NIH)CFAP58
Genomic and cartography
GoldenPath hg19 (UCSC)CFAP58  -     chr10:106113522-106214848 +  10q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CFAP58  -     10q25.1   [Description]    (hg38-Dec_2013)
EnsemblCFAP58 - 10q25.1 [CytoView hg19]  CFAP58 - 10q25.1 [CytoView hg38]
Mapping of homologs : NCBICFAP58 [Mapview hg19]  CFAP58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093227 AK296463 BC036225 BC109126 BX641120
RefSeq transcript (Entrez)NM_001008723
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP58
Cluster EST : UnigeneHs.253576 [ NCBI ]
CGAP (NCI)Hs.253576
Gene ExpressionCFAP58 [ NCBI-GEO ]   CFAP58 [ EBI - ARRAY_EXPRESS ]   CFAP58 [ SEEK ]   CFAP58 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159686
GTEX Portal (Tissue expression)CFAP58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T655   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T655  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T655
Splice isoforms : SwissVarQ5T655
PhosPhoSitePlusQ5T655
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP58
DMDM Disease mutations159686
Blocks (Seattle)CFAP58
SuperfamilyQ5T655
Peptide AtlasQ5T655
IPIIPI00174574   IPI00024280   
Protein Interaction databases
DIP (DOE-UCLA)Q5T655
IntAct (EBI)Q5T655
BioGRIDCFAP58
STRING (EMBL)CFAP58
ZODIACCFAP58
Ontologies - Pathways
QuickGOQ5T655
Ontology : AmiGOprotein binding  extracellular space  cilium  
Ontology : EGO-EBIprotein binding  extracellular space  cilium  
NDEx NetworkCFAP58
Atlas of Cancer Signalling NetworkCFAP58
Wikipedia pathwaysCFAP58
Orthology - Evolution
OrthoDB159686
Phylogenetic Trees/Animal Genes : TreeFamCFAP58
HOVERGENQ5T655
HOGENOMQ5T655
Homologs : HomoloGeneCFAP58
Homology/Alignments : Family Browser (UCSC)CFAP58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP58
dbVarCFAP58
ClinVarCFAP58
1000_GenomesCFAP58 
Exome Variant ServerCFAP58
ExAC (Exome Aggregation Consortium)CFAP58 (select the gene name)
Genetic variants : HAPMAP159686
Genomic Variants (DGV)CFAP58 [DGVbeta]
DECIPHER (Syndromes)10:106113522-106214848  
CONAN: Copy Number AnalysisCFAP58 
Mutations
ICGC Data PortalCFAP58 
TCGA Data PortalCFAP58 
Broad Tumor PortalCFAP58
OASIS PortalCFAP58 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP58
BioMutasearch CFAP58
DgiDB (Drug Gene Interaction Database)CFAP58
DoCM (Curated mutations)CFAP58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP58 (select a term)
intoGenCFAP58
Cancer3DCFAP58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP58
Genetic Testing Registry CFAP58
NextProtQ5T655 [Medical]
TSGene159686
GENETestsCFAP58
Huge Navigator CFAP58 [HugePedia]
snp3D : Map Gene to Disease159686
BioCentury BCIQCFAP58
ClinGenCFAP58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159686
Chemical/Pharm GKB GenePA162381518
Clinical trialCFAP58
Miscellaneous
canSAR (ICR)CFAP58 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP58
EVEXCFAP58
GoPubMedCFAP58
iHOPCFAP58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:56:18 CEST 2017

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