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CFAP61 (cilia and flagella associated protein 61)

Identity

Alias_namesC20orf26
chromosome 20 open reading frame 26
Alias_symbol (synonym)DKFZP434K156
dJ1002M8.3
CaM-IP3
Other aliasdJ1178H5.4
HGNC (Hugo) CFAP61
LocusID (NCBI) 26074
Atlas_Id 61763
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 20056646 and ends at 20172333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN1 (6p22.3) / CFAP61 (20p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP61   15872
Cards
Entrez_Gene (NCBI)CFAP61  26074  cilia and flagella associated protein 61
AliasesC20orf26; CaM-IP3; dJ1002M8.3; dJ1178H5.4
GeneCards (Weizmann)CFAP61
Ensembl hg19 (Hinxton)ENSG00000089101 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089101 [Gene_View]  chr20:20056646-20172333 [Contig_View]  CFAP61 [Vega]
ICGC DataPortalENSG00000089101
TCGA cBioPortalCFAP61
AceView (NCBI)CFAP61
Genatlas (Paris)CFAP61
WikiGenes26074
SOURCE (Princeton)CFAP61
Genetics Home Reference (NIH)CFAP61
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP61  -     chr20:20056646-20172333 +  20p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP61  -     20p11.23   [Description]    (hg19-Feb_2009)
EnsemblCFAP61 - 20p11.23 [CytoView hg19]  CFAP61 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBICFAP61 [Mapview hg19]  CFAP61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057364 AK304174 AK307817 AL117439 BC015959
RefSeq transcript (Entrez)NM_001167816 NM_015585
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP61
Cluster EST : UnigeneHs.729168 [ NCBI ]
CGAP (NCI)Hs.729168
Alternative Splicing GalleryENSG00000089101
Gene ExpressionCFAP61 [ NCBI-GEO ]   CFAP61 [ EBI - ARRAY_EXPRESS ]   CFAP61 [ SEEK ]   CFAP61 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26074
GTEX Portal (Tissue expression)CFAP61
Human Protein AtlasENSG00000089101-CFAP61 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHU2
Splice isoforms : SwissVarQ8NHU2
PhosPhoSitePlusQ8NHU2
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    CFAP61_N    FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)DUF4821 (PF16092)   
Domain families : Pfam (NCBI)pfam16092   
Conserved Domain (NCBI)CFAP61
DMDM Disease mutations26074
Blocks (Seattle)CFAP61
SuperfamilyQ8NHU2
Human Protein Atlas [tissue]ENSG00000089101-CFAP61 [tissue]
Peptide AtlasQ8NHU2
HPRD16647
IPIIPI00169330   IPI00219969   IPI00219970   IPI00219971   IPI00555824   IPI00922556   IPI00412758   IPI00552244   IPI01014962   IPI00946433   IPI00946256   IPI00946238   IPI00946426   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHU2
IntAct (EBI)Q8NHU2
FunCoupENSG00000089101
BioGRIDCFAP61
STRING (EMBL)CFAP61
ZODIACCFAP61
Ontologies - Pathways
QuickGOQ8NHU2
Ontology : AmiGOradial spoke stalk  cilium movement  cytoplasm  axoneme  oxidoreductase activity  motile cilium  cilium organization  oxidation-reduction process  
Ontology : EGO-EBIradial spoke stalk  cilium movement  cytoplasm  axoneme  oxidoreductase activity  motile cilium  cilium organization  oxidation-reduction process  
NDEx NetworkCFAP61
Atlas of Cancer Signalling NetworkCFAP61
Wikipedia pathwaysCFAP61
Orthology - Evolution
OrthoDB26074
GeneTree (enSembl)ENSG00000089101
Phylogenetic Trees/Animal Genes : TreeFamCFAP61
HOVERGENQ8NHU2
HOGENOMQ8NHU2
Homologs : HomoloGeneCFAP61
Homology/Alignments : Family Browser (UCSC)CFAP61
Gene fusions - Rearrangements
Tumor Fusion PortalCFAP61
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP61
dbVarCFAP61
ClinVarCFAP61
1000_GenomesCFAP61 
Exome Variant ServerCFAP61
ExAC (Exome Aggregation Consortium)ENSG00000089101
GNOMAD BrowserENSG00000089101
Genetic variants : HAPMAP26074
Genomic Variants (DGV)CFAP61 [DGVbeta]
DECIPHERCFAP61 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP61 
Mutations
ICGC Data PortalCFAP61 
TCGA Data PortalCFAP61 
Broad Tumor PortalCFAP61
OASIS PortalCFAP61 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP61
BioMutasearch CFAP61
DgiDB (Drug Gene Interaction Database)CFAP61
DoCM (Curated mutations)CFAP61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP61 (select a term)
intoGenCFAP61
Cancer3DCFAP61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCFAP61
MedgenCFAP61
Genetic Testing Registry CFAP61
NextProtQ8NHU2 [Medical]
TSGene26074
GENETestsCFAP61
Target ValidationCFAP61
Huge Navigator CFAP61 [HugePedia]
snp3D : Map Gene to Disease26074
BioCentury BCIQCFAP61
ClinGenCFAP61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26074
Chemical/Pharm GKB GenePA25741
Clinical trialCFAP61
Miscellaneous
canSAR (ICR)CFAP61 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP61
EVEXCFAP61
GoPubMedCFAP61
iHOPCFAP61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:18 CET 2017

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