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CFAP65 (cilia and flagella associated protein 65)

Identity

Alias_namesCCDC108
coiled-coil domain containing 108
Alias_symbol (synonym)DKFZp434O0527
MGC35338
Other alias
HGNC (Hugo) CFAP65
LocusID (NCBI) 255101
Atlas_Id 77823
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219026548 and ends at 219041551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP65   25325
Cards
Entrez_Gene (NCBI)CFAP65  255101  cilia and flagella associated protein 65
AliasesCCDC108
GeneCards (Weizmann)CFAP65
Ensembl hg19 (Hinxton)ENSG00000181378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181378 [Gene_View]  chr2:219026548-219041551 [Contig_View]  CFAP65 [Vega]
ICGC DataPortalENSG00000181378
TCGA cBioPortalCFAP65
AceView (NCBI)CFAP65
Genatlas (Paris)CFAP65
WikiGenes255101
SOURCE (Princeton)CFAP65
Genetics Home Reference (NIH)CFAP65
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP65  -     chr2:219026548-219041551 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP65  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblCFAP65 - 2q35 [CytoView hg19]  CFAP65 - 2q35 [CytoView hg38]
Mapping of homologs : NCBICFAP65 [Mapview hg19]  CFAP65 [Mapview hg38]
OMIM614270   
Gene and transcription
Genbank (Entrez)AA503417 AK123235 AK125957 AK127189 AK302678
RefSeq transcript (Entrez)NM_001278295 NM_001278296 NM_152389 NM_194302
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP65
Cluster EST : UnigeneHs.147762 [ NCBI ]
CGAP (NCI)Hs.147762
Alternative Splicing GalleryENSG00000181378
Gene ExpressionCFAP65 [ NCBI-GEO ]   CFAP65 [ EBI - ARRAY_EXPRESS ]   CFAP65 [ SEEK ]   CFAP65 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP65 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255101
GTEX Portal (Tissue expression)CFAP65
Human Protein AtlasENSG00000181378-CFAP65 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU64
Splice isoforms : SwissVarQ6ZU64
PhosPhoSitePlusQ6ZU64
Domaine pattern : Prosite (Expaxy)MSP (PS50202)   
Domains : Interpro (EBI)MSP_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP65
DMDM Disease mutations255101
Blocks (Seattle)CFAP65
SuperfamilyQ6ZU64
Human Protein Atlas [tissue]ENSG00000181378-CFAP65 [tissue]
Peptide AtlasQ6ZU64
HPRD13201
IPIIPI00746946   IPI01015199   IPI00657672   IPI00916462   IPI00645641   IPI00916250   IPI00916886   IPI00926224   IPI00925613   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU64
IntAct (EBI)Q6ZU64
FunCoupENSG00000181378
BioGRIDCFAP65
STRING (EMBL)CFAP65
ZODIACCFAP65
Ontologies - Pathways
QuickGOQ6ZU64
Ontology : AmiGORNA binding  plasma membrane  integral component of membrane  motile cilium  
Ontology : EGO-EBIRNA binding  plasma membrane  integral component of membrane  motile cilium  
NDEx NetworkCFAP65
Atlas of Cancer Signalling NetworkCFAP65
Wikipedia pathwaysCFAP65
Orthology - Evolution
OrthoDB255101
GeneTree (enSembl)ENSG00000181378
Phylogenetic Trees/Animal Genes : TreeFamCFAP65
HOVERGENQ6ZU64
HOGENOMQ6ZU64
Homologs : HomoloGeneCFAP65
Homology/Alignments : Family Browser (UCSC)CFAP65
Gene fusions - Rearrangements
Tumor Fusion PortalCFAP65
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP65 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP65
dbVarCFAP65
ClinVarCFAP65
1000_GenomesCFAP65 
Exome Variant ServerCFAP65
ExAC (Exome Aggregation Consortium)ENSG00000181378
GNOMAD BrowserENSG00000181378
Genetic variants : HAPMAP255101
Genomic Variants (DGV)CFAP65 [DGVbeta]
DECIPHERCFAP65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP65 
Mutations
ICGC Data PortalCFAP65 
TCGA Data PortalCFAP65 
Broad Tumor PortalCFAP65
OASIS PortalCFAP65 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP65
BioMutasearch CFAP65
DgiDB (Drug Gene Interaction Database)CFAP65
DoCM (Curated mutations)CFAP65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP65 (select a term)
intoGenCFAP65
Cancer3DCFAP65(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614270   
Orphanet
DisGeNETCFAP65
MedgenCFAP65
Genetic Testing Registry CFAP65
NextProtQ6ZU64 [Medical]
TSGene255101
GENETestsCFAP65
Target ValidationCFAP65
Huge Navigator CFAP65 [HugePedia]
snp3D : Map Gene to Disease255101
BioCentury BCIQCFAP65
ClinGenCFAP65
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255101
Chemical/Pharm GKB GenePA145008681
Clinical trialCFAP65
Miscellaneous
canSAR (ICR)CFAP65 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP65
EVEXCFAP65
GoPubMedCFAP65
iHOPCFAP65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:12 CET 2017

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