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CFAP70 (cilia and flagella associated protein 70)

Identity

Alias_namesTTC18
tetratricopeptide repeat domain 18
Alias_symbol (synonym)FLJ25765
Other alias
HGNC (Hugo) CFAP70
LocusID (NCBI) 118491
Atlas_Id 61764
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73253758 and ends at 73358859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CFAP70 (10q22.2) / MCU (10q22.1)ECD (10q22.1) / CFAP70 (10q22.2)MRPS16 (10q22.2) / CFAP70 (10q22.2)
SMURF1 (7q22.1) / CFAP70 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP70   30726
Cards
Entrez_Gene (NCBI)CFAP70  118491  cilia and flagella associated protein 70
AliasesTTC18
GeneCards (Weizmann)CFAP70
Ensembl hg19 (Hinxton)ENSG00000156042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156042 [Gene_View]  chr10:73253758-73358859 [Contig_View]  CFAP70 [Vega]
ICGC DataPortalENSG00000156042
TCGA cBioPortalCFAP70
AceView (NCBI)CFAP70
Genatlas (Paris)CFAP70
WikiGenes118491
SOURCE (Princeton)CFAP70
Genetics Home Reference (NIH)CFAP70
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP70  -     chr10:73253758-73358859 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP70  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblCFAP70 - 10q22.2 [CytoView hg19]  CFAP70 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBICFAP70 [Mapview hg19]  CFAP70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF435958 AF435959 AI458159 AK022235 AK098631
RefSeq transcript (Entrez)NM_001350933 NM_001350934 NM_145170
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP70
Cluster EST : UnigeneHs.720588 [ NCBI ]
CGAP (NCI)Hs.720588
Alternative Splicing GalleryENSG00000156042
Gene ExpressionCFAP70 [ NCBI-GEO ]   CFAP70 [ EBI - ARRAY_EXPRESS ]   CFAP70 [ SEEK ]   CFAP70 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118491
GTEX Portal (Tissue expression)CFAP70
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0N1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0N1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0N1
Splice isoforms : SwissVarQ5T0N1
PhosPhoSitePlusQ5T0N1
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)CFAP70
DMDM Disease mutations118491
Blocks (Seattle)CFAP70
SuperfamilyQ5T0N1
Human Protein AtlasENSG00000156042
Peptide AtlasQ5T0N1
HPRD15583
IPIIPI00217938   IPI00902826   IPI00956282   IPI00478343   IPI00513680   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0N1
IntAct (EBI)Q5T0N1
FunCoupENSG00000156042
BioGRIDCFAP70
STRING (EMBL)CFAP70
ZODIACCFAP70
Ontologies - Pathways
QuickGOQ5T0N1
Ontology : AmiGOmolecular_function  cilium  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  cilium  biological_process  extracellular exosome  
NDEx NetworkCFAP70
Atlas of Cancer Signalling NetworkCFAP70
Wikipedia pathwaysCFAP70
Orthology - Evolution
OrthoDB118491
GeneTree (enSembl)ENSG00000156042
Phylogenetic Trees/Animal Genes : TreeFamCFAP70
HOVERGENQ5T0N1
HOGENOMQ5T0N1
Homologs : HomoloGeneCFAP70
Homology/Alignments : Family Browser (UCSC)CFAP70
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP70
dbVarCFAP70
ClinVarCFAP70
1000_GenomesCFAP70 
Exome Variant ServerCFAP70
ExAC (Exome Aggregation Consortium)CFAP70 (select the gene name)
Genetic variants : HAPMAP118491
Genomic Variants (DGV)CFAP70 [DGVbeta]
DECIPHERCFAP70 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP70 
Mutations
ICGC Data PortalCFAP70 
TCGA Data PortalCFAP70 
Broad Tumor PortalCFAP70
OASIS PortalCFAP70 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP70
BioMutasearch CFAP70
DgiDB (Drug Gene Interaction Database)CFAP70
DoCM (Curated mutations)CFAP70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP70 (select a term)
intoGenCFAP70
Cancer3DCFAP70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP70
Genetic Testing Registry CFAP70
NextProtQ5T0N1 [Medical]
TSGene118491
GENETestsCFAP70
Target ValidationCFAP70
Huge Navigator CFAP70 [HugePedia]
snp3D : Map Gene to Disease118491
BioCentury BCIQCFAP70
ClinGenCFAP70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118491
Chemical/Pharm GKB GenePA134881300
Clinical trialCFAP70
Miscellaneous
canSAR (ICR)CFAP70 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP70
EVEXCFAP70
GoPubMedCFAP70
iHOPCFAP70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:27 CEST 2017

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