Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CFAP77 (cilia and flagella associated protein 77)

Identity

Alias_namesC9orf171
chromosome 9 open reading frame 171
Alias_symbol (synonym)FLJ46082
Other alias
HGNC (Hugo) CFAP77
LocusID (NCBI) 389799
Atlas_Id 77825
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 132410196 and ends at 132573319 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP77   33776
Cards
Entrez_Gene (NCBI)CFAP77  389799  cilia and flagella associated protein 77
AliasesC9orf171
GeneCards (Weizmann)CFAP77
Ensembl hg19 (Hinxton)ENSG00000188523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188523 [Gene_View]  chr9:132410196-132573319 [Contig_View]  CFAP77 [Vega]
ICGC DataPortalENSG00000188523
TCGA cBioPortalCFAP77
AceView (NCBI)CFAP77
Genatlas (Paris)CFAP77
WikiGenes389799
SOURCE (Princeton)CFAP77
Genetics Home Reference (NIH)CFAP77
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP77  -     chr9:132410196-132573319 +  9q34.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP77  -     9q34.13   [Description]    (hg19-Feb_2009)
EnsemblCFAP77 - 9q34.13 [CytoView hg19]  CFAP77 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBICFAP77 [Mapview hg19]  CFAP77 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128819 BC118593 BC124555 HY017665
RefSeq transcript (Entrez)NM_001282957 NM_207417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP77
Cluster EST : UnigeneHs.201709 [ NCBI ]
CGAP (NCI)Hs.201709
Alternative Splicing GalleryENSG00000188523
Gene ExpressionCFAP77 [ NCBI-GEO ]   CFAP77 [ EBI - ARRAY_EXPRESS ]   CFAP77 [ SEEK ]   CFAP77 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389799
GTEX Portal (Tissue expression)CFAP77
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQR2
Splice isoforms : SwissVarQ6ZQR2
PhosPhoSitePlusQ6ZQR2
Domains : Interpro (EBI)DUF4483   
Domain families : Pfam (Sanger)DUF4483 (PF14825)   
Domain families : Pfam (NCBI)pfam14825   
Conserved Domain (NCBI)CFAP77
DMDM Disease mutations389799
Blocks (Seattle)CFAP77
SuperfamilyQ6ZQR2
Human Protein AtlasENSG00000188523
Peptide AtlasQ6ZQR2
HPRD13522
IPIIPI00410493   IPI00784037   IPI00796320   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQR2
IntAct (EBI)Q6ZQR2
FunCoupENSG00000188523
BioGRIDCFAP77
STRING (EMBL)CFAP77
ZODIACCFAP77
Ontologies - Pathways
QuickGOQ6ZQR2
Ontology : AmiGOprotein binding  cilium  
Ontology : EGO-EBIprotein binding  cilium  
NDEx NetworkCFAP77
Atlas of Cancer Signalling NetworkCFAP77
Wikipedia pathwaysCFAP77
Orthology - Evolution
OrthoDB389799
GeneTree (enSembl)ENSG00000188523
Phylogenetic Trees/Animal Genes : TreeFamCFAP77
HOVERGENQ6ZQR2
HOGENOMQ6ZQR2
Homologs : HomoloGeneCFAP77
Homology/Alignments : Family Browser (UCSC)CFAP77
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP77
dbVarCFAP77
ClinVarCFAP77
1000_GenomesCFAP77 
Exome Variant ServerCFAP77
ExAC (Exome Aggregation Consortium)CFAP77 (select the gene name)
Genetic variants : HAPMAP389799
Genomic Variants (DGV)CFAP77 [DGVbeta]
DECIPHERCFAP77 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP77 
Mutations
ICGC Data PortalCFAP77 
TCGA Data PortalCFAP77 
Broad Tumor PortalCFAP77
OASIS PortalCFAP77 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP77
BioMutasearch CFAP77
DgiDB (Drug Gene Interaction Database)CFAP77
DoCM (Curated mutations)CFAP77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP77 (select a term)
intoGenCFAP77
Cancer3DCFAP77(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP77
Genetic Testing Registry CFAP77
NextProtQ6ZQR2 [Medical]
TSGene389799
GENETestsCFAP77
Target ValidationCFAP77
Huge Navigator CFAP77 [HugePedia]
snp3D : Map Gene to Disease389799
BioCentury BCIQCFAP77
ClinGenCFAP77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389799
Chemical/Pharm GKB GenePA164717530
Clinical trialCFAP77
Miscellaneous
canSAR (ICR)CFAP77 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP77
EVEXCFAP77
GoPubMedCFAP77
iHOPCFAP77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.