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CFAP97 (cilia and flagella associated protein 97)

Identity

Alias_namesKIAA1430
KIAA1430
Alias_symbol (synonym)DKFZp434F1728
hmw
Other alias
HGNC (Hugo) CFAP97
LocusID (NCBI) 57587
Atlas_Id 61766
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185169026 and ends at 185204028 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CFAP97 (4q35.1) / CCDC110 (4q35.1)FAT1 (4q35.2) / CFAP97 (4q35.1)SIAH2 (3q25.1) / CFAP97 (4q35.1)
SNRPB2 (20p12.1) / CFAP97 (4q35.1)VHL (3p25.3) / CFAP97 (4q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP97   29276
Cards
Entrez_Gene (NCBI)CFAP97  57587  cilia and flagella associated protein 97
AliasesKIAA1430; hmw
GeneCards (Weizmann)CFAP97
Ensembl hg19 (Hinxton)ENSG00000164323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164323 [Gene_View]  chr4:185169026-185204028 [Contig_View]  CFAP97 [Vega]
ICGC DataPortalENSG00000164323
TCGA cBioPortalCFAP97
AceView (NCBI)CFAP97
Genatlas (Paris)CFAP97
WikiGenes57587
SOURCE (Princeton)CFAP97
Genetics Home Reference (NIH)CFAP97
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP97  -     chr4:185169026-185204028 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP97  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblCFAP97 - 4q35.1 [CytoView hg19]  CFAP97 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBICFAP97 [Mapview hg19]  CFAP97 [Mapview hg38]
OMIM616047   
Gene and transcription
Genbank (Entrez)AB037851 AK024878 AK091993 AK130263 AL133615
RefSeq transcript (Entrez)NM_001292033 NM_020827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP97
Cluster EST : UnigeneHs.535734 [ NCBI ]
CGAP (NCI)Hs.535734
Alternative Splicing GalleryENSG00000164323
Gene ExpressionCFAP97 [ NCBI-GEO ]   CFAP97 [ EBI - ARRAY_EXPRESS ]   CFAP97 [ SEEK ]   CFAP97 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP97 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57587
GTEX Portal (Tissue expression)CFAP97
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2B7
Splice isoforms : SwissVarQ9P2B7
PhosPhoSitePlusQ9P2B7
Domains : Interpro (EBI)Hmw/KIAA1430   
Domain families : Pfam (Sanger)KIAA1430 (PF13879)   
Domain families : Pfam (NCBI)pfam13879   
Conserved Domain (NCBI)CFAP97
DMDM Disease mutations57587
Blocks (Seattle)CFAP97
SuperfamilyQ9P2B7
Human Protein AtlasENSG00000164323
Peptide AtlasQ9P2B7
IPIIPI00853627   IPI00871554   IPI00967102   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2B7
IntAct (EBI)Q9P2B7
FunCoupENSG00000164323
BioGRIDCFAP97
STRING (EMBL)CFAP97
ZODIACCFAP97
Ontologies - Pathways
QuickGOQ9P2B7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCFAP97
Atlas of Cancer Signalling NetworkCFAP97
Wikipedia pathwaysCFAP97
Orthology - Evolution
OrthoDB57587
GeneTree (enSembl)ENSG00000164323
Phylogenetic Trees/Animal Genes : TreeFamCFAP97
HOVERGENQ9P2B7
HOGENOMQ9P2B7
Homologs : HomoloGeneCFAP97
Homology/Alignments : Family Browser (UCSC)CFAP97
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP97 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP97
dbVarCFAP97
ClinVarCFAP97
1000_GenomesCFAP97 
Exome Variant ServerCFAP97
ExAC (Exome Aggregation Consortium)CFAP97 (select the gene name)
Genetic variants : HAPMAP57587
Genomic Variants (DGV)CFAP97 [DGVbeta]
DECIPHERCFAP97 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP97 
Mutations
ICGC Data PortalCFAP97 
TCGA Data PortalCFAP97 
Broad Tumor PortalCFAP97
OASIS PortalCFAP97 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP97
BioMutasearch CFAP97
DgiDB (Drug Gene Interaction Database)CFAP97
DoCM (Curated mutations)CFAP97 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP97 (select a term)
intoGenCFAP97
Cancer3DCFAP97(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616047   
Orphanet
MedgenCFAP97
Genetic Testing Registry CFAP97
NextProtQ9P2B7 [Medical]
TSGene57587
GENETestsCFAP97
Target ValidationCFAP97
Huge Navigator CFAP97 [HugePedia]
snp3D : Map Gene to Disease57587
BioCentury BCIQCFAP97
ClinGenCFAP97
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57587
Chemical/Pharm GKB GenePA134887257
Clinical trialCFAP97
Miscellaneous
canSAR (ICR)CFAP97 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP97
EVEXCFAP97
GoPubMedCFAP97
iHOPCFAP97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:12:13 CEST 2017

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