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CFAP97 (cilia and flagella associated protein 97)

Identity

Alias (NCBI)KIAA1430
hmw
HGNC (Hugo) CFAP97
HGNC Alias symbDKFZp434F1728
hmw
HGNC Previous nameKIAA1430
HGNC Previous nameKIAA1430
LocusID (NCBI) 57587
Atlas_Id 61766
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185159662 and ends at 185204028 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CFAP97 (4q35.1) / CCDC110 (4q35.1)FAT1 (4q35.2) / CFAP97 (4q35.1)SIAH2 (3q25.1) / CFAP97 (4q35.1)
SNRPB2 (20p12.1) / CFAP97 (4q35.1)VHL (3p25.3) / CFAP97 (4q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(3;4)(p25;q35) VHL/CFAP97
t(3;4)(q25;q35) SIAH2/CFAP97
CFAP97/CCDC110 (4q35)
FAT1/CFAP97 (4q35)


External links

Nomenclature
HGNC (Hugo)CFAP97   29276
Cards
Entrez_Gene (NCBI)CFAP97  57587  cilia and flagella associated protein 97
AliasesKIAA1430; hmw
GeneCards (Weizmann)CFAP97
Ensembl hg19 (Hinxton)ENSG00000164323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164323 [Gene_View]  ENSG00000164323 [Sequence]  chr4:185159662-185204028 [Contig_View]  CFAP97 [Vega]
ICGC DataPortalENSG00000164323
TCGA cBioPortalCFAP97
AceView (NCBI)CFAP97
Genatlas (Paris)CFAP97
WikiGenes57587
SOURCE (Princeton)CFAP97
Genetics Home Reference (NIH)CFAP97
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP97  -     chr4:185159662-185204028 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP97  -     4q35.1   [Description]    (hg19-Feb_2009)
GoldenPathCFAP97 - 4q35.1 [CytoView hg19]  CFAP97 - 4q35.1 [CytoView hg38]
ImmunoBaseENSG00000164323
genome Data Viewer NCBICFAP97 [Mapview hg19]  
OMIM616047   
Gene and transcription
Genbank (Entrez)AB037851 AK024878 AK091993 AK130263 AL133615
RefSeq transcript (Entrez)NM_001292033 NM_020827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP97
Alternative Splicing GalleryENSG00000164323
Gene ExpressionCFAP97 [ NCBI-GEO ]   CFAP97 [ EBI - ARRAY_EXPRESS ]   CFAP97 [ SEEK ]   CFAP97 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP97 [ Firebrowse - Broad ]
GenevisibleExpression of CFAP97 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57587
GTEX Portal (Tissue expression)CFAP97
Human Protein AtlasENSG00000164323-CFAP97 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2B7
Splice isoforms : SwissVarQ9P2B7
PhosPhoSitePlusQ9P2B7
Domains : Interpro (EBI)Cfap97/Hemingway    Hmw/CFAP97D1   
Domain families : Pfam (Sanger)KIAA1430 (PF13879)   
Domain families : Pfam (NCBI)pfam13879   
Conserved Domain (NCBI)CFAP97
DMDM Disease mutations57587
Blocks (Seattle)CFAP97
SuperfamilyQ9P2B7
Human Protein Atlas [tissue]ENSG00000164323-CFAP97 [tissue]
Peptide AtlasQ9P2B7
IPIIPI00853627   IPI00871554   IPI00967102   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2B7
IntAct (EBI)Q9P2B7
FunCoupENSG00000164323
BioGRIDCFAP97
STRING (EMBL)CFAP97
ZODIACCFAP97
Ontologies - Pathways
QuickGOQ9P2B7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCFAP97
Atlas of Cancer Signalling NetworkCFAP97
Wikipedia pathwaysCFAP97
Orthology - Evolution
OrthoDB57587
GeneTree (enSembl)ENSG00000164323
Phylogenetic Trees/Animal Genes : TreeFamCFAP97
HOGENOMQ9P2B7
Homologs : HomoloGeneCFAP97
Homology/Alignments : Family Browser (UCSC)CFAP97
Gene fusions - Rearrangements
Fusion : QuiverCFAP97
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP97 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP97
dbVarCFAP97
ClinVarCFAP97
1000_GenomesCFAP97 
Exome Variant ServerCFAP97
GNOMAD BrowserENSG00000164323
Varsome BrowserCFAP97
Genetic variants : HAPMAP57587
Genomic Variants (DGV)CFAP97 [DGVbeta]
DECIPHERCFAP97 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP97 
Mutations
ICGC Data PortalCFAP97 
TCGA Data PortalCFAP97 
Broad Tumor PortalCFAP97
OASIS PortalCFAP97 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCFAP97  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCFAP97
Mutations and Diseases : HGMDCFAP97
BioMutasearch CFAP97
DgiDB (Drug Gene Interaction Database)CFAP97
DoCM (Curated mutations)CFAP97 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP97 (select a term)
intoGenCFAP97
Cancer3DCFAP97(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616047   
Orphanet
DisGeNETCFAP97
MedgenCFAP97
Genetic Testing Registry CFAP97
NextProtQ9P2B7 [Medical]
TSGene57587
GENETestsCFAP97
Target ValidationCFAP97
Huge Navigator CFAP97 [HugePedia]
snp3D : Map Gene to Disease57587
BioCentury BCIQCFAP97
ClinGenCFAP97
Clinical trials, drugs, therapy
Protein Interactions : CTD57587
Pharm GKB GenePA134887257
Clinical trialCFAP97
Miscellaneous
canSAR (ICR)CFAP97 (select the gene name)
HarmonizomeCFAP97
DataMed IndexCFAP97
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP97
EVEXCFAP97
GoPubMedCFAP97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:08:32 CEST 2020

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