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CFC1B (cripto, FRL-1, cryptic family 1B)

Identity

Other alias-
HGNC (Hugo) CFC1B
LocusID (NCBI) 653275
Atlas_Id 61769
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130521094 and ends at 130527992 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNF185 (22q12.2) / CFC1B (2q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFC1B   33983
Cards
Entrez_Gene (NCBI)CFC1B  653275  cripto, FRL-1, cryptic family 1B
Aliases
GeneCards (Weizmann)CFC1B
Ensembl hg19 (Hinxton)ENSG00000152093 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152093 [Gene_View]  chr2:130521094-130527992 [Contig_View]  CFC1B [Vega]
ICGC DataPortalENSG00000152093
TCGA cBioPortalCFC1B
AceView (NCBI)CFC1B
Genatlas (Paris)CFC1B
WikiGenes653275
SOURCE (Princeton)CFC1B
Genetics Home Reference (NIH)CFC1B
Genomic and cartography
GoldenPath hg38 (UCSC)CFC1B  -     chr2:130521094-130527992 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFC1B  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblCFC1B - 2q21.1 [CytoView hg19]  CFC1B - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBICFC1B [Mapview hg19]  CFC1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM716751 BQ777283 BU784123
RefSeq transcript (Entrez)NM_001079530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFC1B
Cluster EST : UnigeneHs.503733 [ NCBI ]
CGAP (NCI)Hs.503733
Alternative Splicing GalleryENSG00000152093
Gene ExpressionCFC1B [ NCBI-GEO ]   CFC1B [ EBI - ARRAY_EXPRESS ]   CFC1B [ SEEK ]   CFC1B [ MEM ]
Gene Expression Viewer (FireBrowse)CFC1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653275
GTEX Portal (Tissue expression)CFC1B
Human Protein AtlasENSG00000152093-CFC1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG36
Splice isoforms : SwissVarP0CG36
PhosPhoSitePlusP0CG36
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_3 (PS50026)   
Domains : Interpro (EBI)Cryptic/Cripto_CFC-dom    EGF-like_CS    EGF-like_dom   
Domain families : Pfam (Sanger)CFC (PF09443)   
Domain families : Pfam (NCBI)pfam09443   
Conserved Domain (NCBI)CFC1B
DMDM Disease mutations653275
Blocks (Seattle)CFC1B
SuperfamilyP0CG36
Human Protein Atlas [tissue]ENSG00000152093-CFC1B [tissue]
Peptide AtlasP0CG36
IPIIPI00737168   
Protein Interaction databases
DIP (DOE-UCLA)P0CG36
IntAct (EBI)P0CG36
FunCoupENSG00000152093
BioGRIDCFC1B
STRING (EMBL)CFC1B
ZODIACCFC1B
Ontologies - Pathways
QuickGOP0CG36
Ontology : AmiGOextracellular region  gastrulation  
Ontology : EGO-EBIextracellular region  gastrulation  
NDEx NetworkCFC1B
Atlas of Cancer Signalling NetworkCFC1B
Wikipedia pathwaysCFC1B
Orthology - Evolution
OrthoDB653275
GeneTree (enSembl)ENSG00000152093
Phylogenetic Trees/Animal Genes : TreeFamCFC1B
HOVERGENP0CG36
HOGENOMP0CG36
Homologs : HomoloGeneCFC1B
Homology/Alignments : Family Browser (UCSC)CFC1B
Gene fusions - Rearrangements
Fusion: Tumor Portal CFC1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFC1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFC1B
dbVarCFC1B
ClinVarCFC1B
1000_GenomesCFC1B 
Exome Variant ServerCFC1B
ExAC (Exome Aggregation Consortium)ENSG00000152093
GNOMAD BrowserENSG00000152093
Genetic variants : HAPMAP653275
Genomic Variants (DGV)CFC1B [DGVbeta]
DECIPHERCFC1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFC1B 
Mutations
ICGC Data PortalCFC1B 
TCGA Data PortalCFC1B 
Broad Tumor PortalCFC1B
OASIS PortalCFC1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCFC1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCFC1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CFC1B
DgiDB (Drug Gene Interaction Database)CFC1B
DoCM (Curated mutations)CFC1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFC1B (select a term)
intoGenCFC1B
Cancer3DCFC1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFC1B
Genetic Testing Registry CFC1B
NextProtP0CG36 [Medical]
TSGene653275
GENETestsCFC1B
Target ValidationCFC1B
Huge Navigator CFC1B [HugePedia]
snp3D : Map Gene to Disease653275
BioCentury BCIQCFC1B
ClinGenCFC1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653275
Chemical/Pharm GKB GenePA162382207
Clinical trialCFC1B
Miscellaneous
canSAR (ICR)CFC1B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFC1B
EVEXCFC1B
GoPubMedCFC1B
iHOPCFC1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:29 CET 2017

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