Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CFDP1 (craniofacial development protein 1)

Identity

Alias_symbol (synonym)BCNT
p97
CP27
SWC5
Yeti
CENP-29
Other aliasBUCENTAUR
HGNC (Hugo) CFDP1
LocusID (NCBI) 10428
Atlas_Id 40063
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75327608 and ends at 75467387 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AXIN2 (17q24.1) / CFDP1 (16q23.1)CFDP1 (16q23.1) / CFDP1 (16q23.1)CFDP1 (16q23.1) / SLC6A9 (1p34.1)
GLG1 (16q23.1) / CFDP1 (16q23.1)MILR1 (17q23.3) / CFDP1 (16q23.1)MYH9 (22q12.3) / CFDP1 (16q23.1)
SRRM1 (1p36.11) / CFDP1 (16q23.1)GLG1 16q23.1 / CFDP1 16q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFDP1   1873
Cards
Entrez_Gene (NCBI)CFDP1  10428  craniofacial development protein 1
AliasesBCNT; BUCENTAUR; CENP-29; CP27; 
SWC5; Yeti; p97
GeneCards (Weizmann)CFDP1
Ensembl hg19 (Hinxton)ENSG00000153774 [Gene_View]  chr16:75327608-75467387 [Contig_View]  CFDP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153774 [Gene_View]  chr16:75327608-75467387 [Contig_View]  CFDP1 [Vega]
ICGC DataPortalENSG00000153774
TCGA cBioPortalCFDP1
AceView (NCBI)CFDP1
Genatlas (Paris)CFDP1
WikiGenes10428
SOURCE (Princeton)CFDP1
Genetics Home Reference (NIH)CFDP1
Genomic and cartography
GoldenPath hg19 (UCSC)CFDP1  -     chr16:75327608-75467387 -  16q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CFDP1  -     16q23.1   [Description]    (hg38-Dec_2013)
EnsemblCFDP1 - 16q23.1 [CytoView hg19]  CFDP1 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBICFDP1 [Mapview hg19]  CFDP1 [Mapview hg38]
OMIM608108   
Gene and transcription
Genbank (Entrez)AB009285 AK226031 AK313948 AW160432 BC000991
RefSeq transcript (Entrez)NM_006324
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CFDP1
Cluster EST : UnigeneHs.461361 [ NCBI ]
CGAP (NCI)Hs.461361
Alternative Splicing GalleryENSG00000153774
Gene ExpressionCFDP1 [ NCBI-GEO ]   CFDP1 [ EBI - ARRAY_EXPRESS ]   CFDP1 [ SEEK ]   CFDP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CFDP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10428
GTEX Portal (Tissue expression)CFDP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UEE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UEE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UEE9
Splice isoforms : SwissVarQ9UEE9
PhosPhoSitePlusQ9UEE9
Domaine pattern : Prosite (Expaxy)BCNT_C (PS51279)   
Domains : Interpro (EBI)BCNT-C    Swc5/CFDP   
Domain families : Pfam (Sanger)BCNT (PF07572)   
Domain families : Pfam (NCBI)pfam07572   
Conserved Domain (NCBI)CFDP1
DMDM Disease mutations10428
Blocks (Seattle)CFDP1
SuperfamilyQ9UEE9
Human Protein AtlasENSG00000153774
Peptide AtlasQ9UEE9
HPRD16282
IPIIPI00007306   IPI00646794   
Protein Interaction databases
DIP (DOE-UCLA)Q9UEE9
IntAct (EBI)Q9UEE9
FunCoupENSG00000153774
BioGRIDCFDP1
STRING (EMBL)CFDP1
ZODIACCFDP1
Ontologies - Pathways
QuickGOQ9UEE9
Ontology : AmiGOcondensed chromosome kinetochore  molecular_function  cellular_component  cell adhesion  multicellular organism development  biological_process  regulation of cell shape  regulation of cell proliferation  negative regulation of fibroblast apoptotic process  
Ontology : EGO-EBIcondensed chromosome kinetochore  molecular_function  cellular_component  cell adhesion  multicellular organism development  biological_process  regulation of cell shape  regulation of cell proliferation  negative regulation of fibroblast apoptotic process  
NDEx NetworkCFDP1
Atlas of Cancer Signalling NetworkCFDP1
Wikipedia pathwaysCFDP1
Orthology - Evolution
OrthoDB10428
GeneTree (enSembl)ENSG00000153774
Phylogenetic Trees/Animal Genes : TreeFamCFDP1
HOVERGENQ9UEE9
HOGENOMQ9UEE9
Homologs : HomoloGeneCFDP1
Homology/Alignments : Family Browser (UCSC)CFDP1
Gene fusions - Rearrangements
Fusion : MitelmanGLG1/CFDP1 [16q23.1/16q23.1]  [t(16;16)(q23;q23)]  
Fusion: TCGAGLG1 16q23.1 CFDP1 16q23.1 LGG LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFDP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFDP1
dbVarCFDP1
ClinVarCFDP1
1000_GenomesCFDP1 
Exome Variant ServerCFDP1
ExAC (Exome Aggregation Consortium)CFDP1 (select the gene name)
Genetic variants : HAPMAP10428
Genomic Variants (DGV)CFDP1 [DGVbeta]
DECIPHER (Syndromes)16:75327608-75467387  ENSG00000153774
CONAN: Copy Number AnalysisCFDP1 
Mutations
ICGC Data PortalCFDP1 
TCGA Data PortalCFDP1 
Broad Tumor PortalCFDP1
OASIS PortalCFDP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCFDP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCFDP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CFDP1
DgiDB (Drug Gene Interaction Database)CFDP1
DoCM (Curated mutations)CFDP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFDP1 (select a term)
intoGenCFDP1
Cancer3DCFDP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608108   
Orphanet
MedgenCFDP1
Genetic Testing Registry CFDP1
NextProtQ9UEE9 [Medical]
TSGene10428
GENETestsCFDP1
Huge Navigator CFDP1 [HugePedia]
snp3D : Map Gene to Disease10428
BioCentury BCIQCFDP1
ClinGenCFDP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10428
Chemical/Pharm GKB GenePA26422
Clinical trialCFDP1
Miscellaneous
canSAR (ICR)CFDP1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFDP1
EVEXCFDP1
GoPubMedCFDP1
iHOPCFDP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:00:10 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.