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CFHR2 (complement factor H related 2)

Identity

Alias_namesHFL3
CFHL2
H factor (complement)-like 3
complement factor H-related 2
Alias_symbol (synonym)FHR2
Other alias
HGNC (Hugo) CFHR2
LocusID (NCBI) 3080
Atlas_Id 61771
Location 1q31.3  [Link to chromosome band 1q31]
Location_base_pair Starts at 196943768 and ends at 196959226 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFHR2   4890
Cards
Entrez_Gene (NCBI)CFHR2  3080  complement factor H related 2
AliasesCFHL2; FHR2; HFL3
GeneCards (Weizmann)CFHR2
Ensembl hg19 (Hinxton)ENSG00000080910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080910 [Gene_View]  chr1:196943768-196959226 [Contig_View]  CFHR2 [Vega]
ICGC DataPortalENSG00000080910
TCGA cBioPortalCFHR2
AceView (NCBI)CFHR2
Genatlas (Paris)CFHR2
WikiGenes3080
SOURCE (Princeton)CFHR2
Genetics Home Reference (NIH)CFHR2
Genomic and cartography
GoldenPath hg38 (UCSC)CFHR2  -     chr1:196943768-196959226 +  1q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFHR2  -     1q31.3   [Description]    (hg19-Feb_2009)
EnsemblCFHR2 - 1q31.3 [CytoView hg19]  CFHR2 - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBICFHR2 [Mapview hg19]  CFHR2 [Mapview hg38]
OMIM600889   
Gene and transcription
Genbank (Entrez)AX772812 BC022283 BG563114 BG566607 DQ891405
RefSeq transcript (Entrez)NM_001312672 NM_005666
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFHR2
Cluster EST : UnigeneHs.632450 [ NCBI ]
CGAP (NCI)Hs.632450
Alternative Splicing GalleryENSG00000080910
Gene ExpressionCFHR2 [ NCBI-GEO ]   CFHR2 [ EBI - ARRAY_EXPRESS ]   CFHR2 [ SEEK ]   CFHR2 [ MEM ]
Gene Expression Viewer (FireBrowse)CFHR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3080
GTEX Portal (Tissue expression)CFHR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36980   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP36980  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP36980
Splice isoforms : SwissVarP36980
PhosPhoSitePlusP36980
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)CFHR2
DMDM Disease mutations3080
Blocks (Seattle)CFHR2
PDB (SRS)3ZD1    5EA0   
PDB (PDBSum)3ZD1    5EA0   
PDB (IMB)3ZD1    5EA0   
PDB (RSDB)3ZD1    5EA0   
Structural Biology KnowledgeBase3ZD1    5EA0   
SCOP (Structural Classification of Proteins)3ZD1    5EA0   
CATH (Classification of proteins structures)3ZD1    5EA0   
SuperfamilyP36980
Human Protein AtlasENSG00000080910
Peptide AtlasP36980
HPRD02933
IPIIPI00006154   IPI00218949   
Protein Interaction databases
DIP (DOE-UCLA)P36980
IntAct (EBI)P36980
FunCoupENSG00000080910
BioGRIDCFHR2
STRING (EMBL)CFHR2
ZODIACCFHR2
Ontologies - Pathways
QuickGOP36980
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkCFHR2
Atlas of Cancer Signalling NetworkCFHR2
Wikipedia pathwaysCFHR2
Orthology - Evolution
OrthoDB3080
GeneTree (enSembl)ENSG00000080910
Phylogenetic Trees/Animal Genes : TreeFamCFHR2
HOVERGENP36980
HOGENOMP36980
Homologs : HomoloGeneCFHR2
Homology/Alignments : Family Browser (UCSC)CFHR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFHR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFHR2
dbVarCFHR2
ClinVarCFHR2
1000_GenomesCFHR2 
Exome Variant ServerCFHR2
ExAC (Exome Aggregation Consortium)CFHR2 (select the gene name)
Genetic variants : HAPMAP3080
Genomic Variants (DGV)CFHR2 [DGVbeta]
DECIPHERCFHR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFHR2 
Mutations
ICGC Data PortalCFHR2 
TCGA Data PortalCFHR2 
Broad Tumor PortalCFHR2
OASIS PortalCFHR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCFHR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCFHR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CFHR2
DgiDB (Drug Gene Interaction Database)CFHR2
DoCM (Curated mutations)CFHR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFHR2 (select a term)
intoGenCFHR2
Cancer3DCFHR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600889   
Orphanet
MedgenCFHR2
Genetic Testing Registry CFHR2
NextProtP36980 [Medical]
TSGene3080
GENETestsCFHR2
Target ValidationCFHR2
Huge Navigator CFHR2 [HugePedia]
snp3D : Map Gene to Disease3080
BioCentury BCIQCFHR2
ClinGenCFHR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3080
Chemical/Pharm GKB GenePA29267
Clinical trialCFHR2
Miscellaneous
canSAR (ICR)CFHR2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFHR2
EVEXCFHR2
GoPubMedCFHR2
iHOPCFHR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:29 CEST 2017

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