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CFHR4 (complement factor H related 4)

Identity

Alias_namesCFHL4
complement factor H-related 4
Alias_symbol (synonym)FHR-4
FHR4
Other alias
HGNC (Hugo) CFHR4
LocusID (NCBI) 10877
Atlas_Id 61773
Location 1q31.3  [Link to chromosome band 1q31]
Location_base_pair Starts at 196888014 and ends at 196918713 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SETDB1 (1q21.3) / CFHR4 (1q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFHR4   16979
Cards
Entrez_Gene (NCBI)CFHR4  10877  complement factor H related 4
AliasesCFHL4; FHR-4; FHR4
GeneCards (Weizmann)CFHR4
Ensembl hg19 (Hinxton)ENSG00000134365 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134365 [Gene_View]  chr1:196888014-196918713 [Contig_View]  CFHR4 [Vega]
ICGC DataPortalENSG00000134365
TCGA cBioPortalCFHR4
AceView (NCBI)CFHR4
Genatlas (Paris)CFHR4
WikiGenes10877
SOURCE (Princeton)CFHR4
Genetics Home Reference (NIH)CFHR4
Genomic and cartography
GoldenPath hg38 (UCSC)CFHR4  -     chr1:196888014-196918713 +  1q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFHR4  -     1q31.3   [Description]    (hg19-Feb_2009)
EnsemblCFHR4 - 1q31.3 [CytoView hg19]  CFHR4 - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBICFHR4 [Mapview hg19]  CFHR4 [Mapview hg38]
OMIM605337   
Gene and transcription
Genbank (Entrez)AJ640130 AK292752 BC074957 X98337
RefSeq transcript (Entrez)NM_001201550 NM_001201551 NM_006684
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFHR4
Cluster EST : UnigeneHs.710100 [ NCBI ]
CGAP (NCI)Hs.710100
Alternative Splicing GalleryENSG00000134365
Gene ExpressionCFHR4 [ NCBI-GEO ]   CFHR4 [ EBI - ARRAY_EXPRESS ]   CFHR4 [ SEEK ]   CFHR4 [ MEM ]
Gene Expression Viewer (FireBrowse)CFHR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10877
GTEX Portal (Tissue expression)CFHR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92496   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92496  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92496
Splice isoforms : SwissVarQ92496
PhosPhoSitePlusQ92496
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)CFHR4
DMDM Disease mutations10877
Blocks (Seattle)CFHR4
SuperfamilyQ92496
Human Protein AtlasENSG00000134365
Peptide AtlasQ92496
HPRD05627
IPIIPI00021578   IPI01015004   IPI00985459   IPI00644977   
Protein Interaction databases
DIP (DOE-UCLA)Q92496
IntAct (EBI)Q92496
FunCoupENSG00000134365
BioGRIDCFHR4
STRING (EMBL)CFHR4
ZODIACCFHR4
Ontologies - Pathways
QuickGOQ92496
Ontology : AmiGOlipid transporter activity  extracellular region  lipid transport  
Ontology : EGO-EBIlipid transporter activity  extracellular region  lipid transport  
NDEx NetworkCFHR4
Atlas of Cancer Signalling NetworkCFHR4
Wikipedia pathwaysCFHR4
Orthology - Evolution
OrthoDB10877
GeneTree (enSembl)ENSG00000134365
Phylogenetic Trees/Animal Genes : TreeFamCFHR4
HOVERGENQ92496
HOGENOMQ92496
Homologs : HomoloGeneCFHR4
Homology/Alignments : Family Browser (UCSC)CFHR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFHR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFHR4
dbVarCFHR4
ClinVarCFHR4
1000_GenomesCFHR4 
Exome Variant ServerCFHR4
ExAC (Exome Aggregation Consortium)CFHR4 (select the gene name)
Genetic variants : HAPMAP10877
Genomic Variants (DGV)CFHR4 [DGVbeta]
DECIPHERCFHR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFHR4 
Mutations
ICGC Data PortalCFHR4 
TCGA Data PortalCFHR4 
Broad Tumor PortalCFHR4
OASIS PortalCFHR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCFHR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCFHR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CFHR4
DgiDB (Drug Gene Interaction Database)CFHR4
DoCM (Curated mutations)CFHR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFHR4 (select a term)
intoGenCFHR4
Cancer3DCFHR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605337   
Orphanet
MedgenCFHR4
Genetic Testing Registry CFHR4
NextProtQ92496 [Medical]
TSGene10877
GENETestsCFHR4
Target ValidationCFHR4
Huge Navigator CFHR4 [HugePedia]
snp3D : Map Gene to Disease10877
BioCentury BCIQCFHR4
ClinGenCFHR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10877
Chemical/Pharm GKB GenePA134960382
Clinical trialCFHR4
Miscellaneous
canSAR (ICR)CFHR4 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFHR4
EVEXCFHR4
GoPubMedCFHR4
iHOPCFHR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:29 CEST 2017

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