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CGB1 (chorionic gonadotropin beta subunit 1)

Identity

Alias_nameschorionic gonadotropin
Other alias-
HGNC (Hugo) CGB1
LocusID (NCBI) 114335
Atlas_Id 55462
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49035569 and ends at 49036934 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGB1   16721
Cards
Entrez_Gene (NCBI)CGB1  114335  chorionic gonadotropin beta subunit 1
Aliases
GeneCards (Weizmann)CGB1
Ensembl hg19 (Hinxton)ENSG00000267631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267631 [Gene_View]  chr19:49035569-49036934 [Contig_View]  CGB1 [Vega]
ICGC DataPortalENSG00000267631
TCGA cBioPortalCGB1
AceView (NCBI)CGB1
Genatlas (Paris)CGB1
WikiGenes114335
SOURCE (Princeton)CGB1
Genetics Home Reference (NIH)CGB1
Genomic and cartography
GoldenPath hg38 (UCSC)CGB1  -     chr19:49035569-49036934 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CGB1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblCGB1 - 19q13.33 [CytoView hg19]  CGB1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICGB1 [Mapview hg19]  CGB1 [Mapview hg38]
OMIM608823   
Gene and transcription
Genbank (Entrez)BC107144 BC126460 BC172367
RefSeq transcript (Entrez)NM_033377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CGB1
Cluster EST : UnigeneHs.659014 [ NCBI ]
CGAP (NCI)Hs.659014
Alternative Splicing GalleryENSG00000267631
Gene ExpressionCGB1 [ NCBI-GEO ]   CGB1 [ EBI - ARRAY_EXPRESS ]   CGB1 [ SEEK ]   CGB1 [ MEM ]
Gene Expression Viewer (FireBrowse)CGB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114335
GTEX Portal (Tissue expression)CGB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKQ9
Splice isoforms : SwissVarA6NKQ9
PhosPhoSitePlusA6NKQ9
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Glyco_hormone_CN    Gonadotropin_bsu    Gonadotropin_bsu_CS   
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
Conserved Domain (NCBI)CGB1
DMDM Disease mutations114335
Blocks (Seattle)CGB1
SuperfamilyA6NKQ9
Human Protein AtlasENSG00000267631
Peptide AtlasA6NKQ9
HPRD12307
IPIIPI00896513   IPI00844271   IPI01010185   IPI00980043   
Protein Interaction databases
DIP (DOE-UCLA)A6NKQ9
IntAct (EBI)A6NKQ9
FunCoupENSG00000267631
BioGRIDCGB1
STRING (EMBL)CGB1
ZODIACCGB1
Ontologies - Pathways
QuickGOA6NKQ9
Ontology : AmiGOhormone activity  extracellular space  cytoplasm  G-protein coupled receptor signaling pathway  cell-cell signaling  hormone-mediated signaling pathway  ovulation  
Ontology : EGO-EBIhormone activity  extracellular space  cytoplasm  G-protein coupled receptor signaling pathway  cell-cell signaling  hormone-mediated signaling pathway  ovulation  
NDEx NetworkCGB1
Atlas of Cancer Signalling NetworkCGB1
Wikipedia pathwaysCGB1
Orthology - Evolution
OrthoDB114335
GeneTree (enSembl)ENSG00000267631
Phylogenetic Trees/Animal Genes : TreeFamCGB1
HOVERGENA6NKQ9
HOGENOMA6NKQ9
Homologs : HomoloGeneCGB1
Homology/Alignments : Family Browser (UCSC)CGB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGB1
dbVarCGB1
ClinVarCGB1
1000_GenomesCGB1 
Exome Variant ServerCGB1
ExAC (Exome Aggregation Consortium)CGB1 (select the gene name)
Genetic variants : HAPMAP114335
Genomic Variants (DGV)CGB1 [DGVbeta]
DECIPHERCGB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCGB1 
Mutations
ICGC Data PortalCGB1 
TCGA Data PortalCGB1 
Broad Tumor PortalCGB1
OASIS PortalCGB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGB1
DgiDB (Drug Gene Interaction Database)CGB1
DoCM (Curated mutations)CGB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGB1 (select a term)
intoGenCGB1
Cancer3DCGB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608823   
Orphanet
MedgenCGB1
Genetic Testing Registry CGB1
NextProtA6NKQ9 [Medical]
TSGene114335
GENETestsCGB1
Target ValidationCGB1
Huge Navigator CGB1 [HugePedia]
snp3D : Map Gene to Disease114335
BioCentury BCIQCGB1
ClinGenCGB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114335
Chemical/Pharm GKB GenePA26435
Clinical trialCGB1
Miscellaneous
canSAR (ICR)CGB1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGB1
EVEXCGB1
GoPubMedCGB1
iHOPCGB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:28:09 CEST 2017

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