Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CGB2 (chorionic gonadotropin subunit beta 2)

Identity

Alias_nameschorionic gonadotropin
Other alias-
HGNC (Hugo) CGB2
LocusID (NCBI) 114336
Atlas_Id 55485
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49031873 and ends at 49033238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGB2   16722
Cards
Entrez_Gene (NCBI)CGB2  114336  chorionic gonadotropin subunit beta 2
Aliases
GeneCards (Weizmann)CGB2
Ensembl hg19 (Hinxton)ENSG00000104818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104818 [Gene_View]  ENSG00000104818 [Sequence]  chr19:49031873-49033238 [Contig_View]  CGB2 [Vega]
ICGC DataPortalENSG00000104818
TCGA cBioPortalCGB2
AceView (NCBI)CGB2
Genatlas (Paris)CGB2
WikiGenes114336
SOURCE (Princeton)CGB2
Genetics Home Reference (NIH)CGB2
Genomic and cartography
GoldenPath hg38 (UCSC)CGB2  -     chr19:49031873-49033238 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CGB2  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathCGB2 - 19q13.33 [CytoView hg19]  CGB2 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000104818
Mapping of homologs : NCBICGB2 [Mapview hg19]  CGB2 [Mapview hg38]
OMIM608824   
Gene and transcription
Genbank (Entrez)AA400910 BC069367 BC107143
RefSeq transcript (Entrez)NM_001319065 NM_033378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CGB2
Cluster EST : UnigeneHs.567650 [ NCBI ]
CGAP (NCI)Hs.567650
Alternative Splicing GalleryENSG00000104818
Gene ExpressionCGB2 [ NCBI-GEO ]   CGB2 [ EBI - ARRAY_EXPRESS ]   CGB2 [ SEEK ]   CGB2 [ MEM ]
Gene Expression Viewer (FireBrowse)CGB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114336
GTEX Portal (Tissue expression)CGB2
Human Protein AtlasENSG00000104818-CGB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NT52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NT52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NT52
Splice isoforms : SwissVarQ6NT52
PhosPhoSitePlusQ6NT52
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Glyco_hormone_CN    Gonadotropin_bsu    Gonadotropin_bsu_CS   
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
Conserved Domain (NCBI)CGB2
DMDM Disease mutations114336
Blocks (Seattle)CGB2
SuperfamilyQ6NT52
Human Protein Atlas [tissue]ENSG00000104818-CGB2 [tissue]
Peptide AtlasQ6NT52
HPRD12308
IPIIPI00746788   IPI00555688   IPI01010290   IPI00903008   
Protein Interaction databases
DIP (DOE-UCLA)Q6NT52
IntAct (EBI)Q6NT52
FunCoupENSG00000104818
BioGRIDCGB2
STRING (EMBL)CGB2
ZODIACCGB2
Ontologies - Pathways
QuickGOQ6NT52
Ontology : AmiGOhormone activity  hormone activity  extracellular space  cytoplasm  G protein-coupled receptor signaling pathway  hormone-mediated signaling pathway  regulation of signaling receptor activity  
Ontology : EGO-EBIhormone activity  hormone activity  extracellular space  cytoplasm  G protein-coupled receptor signaling pathway  hormone-mediated signaling pathway  regulation of signaling receptor activity  
NDEx NetworkCGB2
Atlas of Cancer Signalling NetworkCGB2
Wikipedia pathwaysCGB2
Orthology - Evolution
OrthoDB114336
GeneTree (enSembl)ENSG00000104818
Phylogenetic Trees/Animal Genes : TreeFamCGB2
HOGENOMQ6NT52
Homologs : HomoloGeneCGB2
Homology/Alignments : Family Browser (UCSC)CGB2
Gene fusions - Rearrangements
Fusion : QuiverCGB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGB2
dbVarCGB2
ClinVarCGB2
1000_GenomesCGB2 
Exome Variant ServerCGB2
ExAC (Exome Aggregation Consortium)ENSG00000104818
GNOMAD BrowserENSG00000104818
Varsome BrowserCGB2
Genetic variants : HAPMAP114336
Genomic Variants (DGV)CGB2 [DGVbeta]
DECIPHERCGB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCGB2 
Mutations
ICGC Data PortalCGB2 
TCGA Data PortalCGB2 
Broad Tumor PortalCGB2
OASIS PortalCGB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGB2
DgiDB (Drug Gene Interaction Database)CGB2
DoCM (Curated mutations)CGB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGB2 (select a term)
intoGenCGB2
Cancer3DCGB2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608824   
Orphanet
DisGeNETCGB2
MedgenCGB2
Genetic Testing Registry CGB2
NextProtQ6NT52 [Medical]
TSGene114336
GENETestsCGB2
Target ValidationCGB2
Huge Navigator CGB2 [HugePedia]
snp3D : Map Gene to Disease114336
BioCentury BCIQCGB2
ClinGenCGB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114336
Chemical/Pharm GKB GenePA26436
Clinical trialCGB2
Miscellaneous
canSAR (ICR)CGB2 (select the gene name)
DataMed IndexCGB2
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGB2
EVEXCGB2
GoPubMedCGB2
iHOPCGB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:58:05 CEST 2019

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