Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CGB3 (chorionic gonadotropin beta subunit 3)

Identity

Alias_namesCGB
chorionic gonadotropin
Other aliasCGB5
CGB7
CGB8
hCGB
HGNC (Hugo) CGB3
LocusID (NCBI) 1082
Atlas_Id 55594
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49526126 and ends at 49527632 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CGB3   1886
Cards
Entrez_Gene (NCBI)CGB3  1082  chorionic gonadotropin beta subunit 3
AliasesCGB; CGB5; CGB7; CGB8; 
hCGB
GeneCards (Weizmann)CGB3
Ensembl hg19 (Hinxton)ENSG00000104827 [Gene_View]  chr19:49526126-49527632 [Contig_View]  CGB3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104827 [Gene_View]  chr19:49526126-49527632 [Contig_View]  CGB3 [Vega]
ICGC DataPortalENSG00000104827
TCGA cBioPortalCGB3
AceView (NCBI)CGB3
Genatlas (Paris)CGB3
WikiGenes1082
SOURCE (Princeton)CGB3
Genetics Home Reference (NIH)CGB3
Genomic and cartography
GoldenPath hg19 (UCSC)CGB3  -     chr19:49526126-49527632 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CGB3  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblCGB3 - 19q13.33 [CytoView hg19]  CGB3 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICGB3 [Mapview hg19]  CGB3 [Mapview hg38]
OMIM118860   
Gene and transcription
Genbank (Entrez)AK291552 BC022796 BC069526 BC106059 BX334905
RefSeq transcript (Entrez)NM_000737
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CGB3
Cluster EST : UnigeneHs.743279 [ NCBI ]
CGAP (NCI)Hs.743279
Alternative Splicing GalleryENSG00000104827
Gene ExpressionCGB3 [ NCBI-GEO ]   CGB3 [ EBI - ARRAY_EXPRESS ]   CGB3 [ SEEK ]   CGB3 [ MEM ]
Gene Expression Viewer (FireBrowse)CGB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1082
GTEX Portal (Tissue expression)CGB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01233   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01233  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01233
Splice isoforms : SwissVarP01233
PhosPhoSitePlusP01233
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Glyco_hormone_CN    Gonadotropin_bsu    Gonadotropin_bsu_CS   
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
Conserved Domain (NCBI)CGB3
DMDM Disease mutations1082
Blocks (Seattle)CGB3
PDB (SRS)1HCN    1HRP    1QFW    1XUL   
PDB (PDBSum)1HCN    1HRP    1QFW    1XUL   
PDB (IMB)1HCN    1HRP    1QFW    1XUL   
PDB (RSDB)1HCN    1HRP    1QFW    1XUL   
Structural Biology KnowledgeBase1HCN    1HRP    1QFW    1XUL   
SCOP (Structural Classification of Proteins)1HCN    1HRP    1QFW    1XUL   
CATH (Classification of proteins structures)1HCN    1HRP    1QFW    1XUL   
SuperfamilyP01233
Human Protein AtlasENSG00000104827
Peptide AtlasP01233
HPRD00343
IPIIPI00954109   IPI01012826   IPI00177818   
Protein Interaction databases
DIP (DOE-UCLA)P01233
IntAct (EBI)P01233
FunCoupENSG00000104827
BioGRIDCGB3
STRING (EMBL)CGB3
ZODIACCGB3
Ontologies - Pathways
QuickGOP01233
Ontology : AmiGOhormone activity  extracellular region  apoptotic process  signal transduction  cell-cell signaling  female gamete generation  peptide hormone processing  
Ontology : EGO-EBIhormone activity  extracellular region  apoptotic process  signal transduction  cell-cell signaling  female gamete generation  peptide hormone processing  
NDEx NetworkCGB3
Atlas of Cancer Signalling NetworkCGB3
Wikipedia pathwaysCGB3
Orthology - Evolution
OrthoDB1082
GeneTree (enSembl)ENSG00000104827
Phylogenetic Trees/Animal Genes : TreeFamCGB3
HOVERGENP01233
HOGENOMP01233
Homologs : HomoloGeneCGB3
Homology/Alignments : Family Browser (UCSC)CGB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGB3
dbVarCGB3
ClinVarCGB3
1000_GenomesCGB3 
Exome Variant ServerCGB3
ExAC (Exome Aggregation Consortium)CGB3 (select the gene name)
Genetic variants : HAPMAP1082
Genomic Variants (DGV)CGB3 [DGVbeta]
DECIPHER (Syndromes)19:49526126-49527632  ENSG00000104827
CONAN: Copy Number AnalysisCGB3 
Mutations
ICGC Data PortalCGB3 
TCGA Data PortalCGB3 
Broad Tumor PortalCGB3
OASIS PortalCGB3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCGB3
BioMutasearch CGB3
DgiDB (Drug Gene Interaction Database)CGB3
DoCM (Curated mutations)CGB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGB3 (select a term)
intoGenCGB3
Cancer3DCGB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118860   
Orphanet
MedgenCGB3
Genetic Testing Registry CGB3
NextProtP01233 [Medical]
TSGene1082
GENETestsCGB3
Huge Navigator CGB3 [HugePedia]
snp3D : Map Gene to Disease1082
BioCentury BCIQCGB3
ClinGenCGB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1082
Chemical/Pharm GKB GenePA26434
Clinical trialCGB3
Miscellaneous
canSAR (ICR)CGB3 (select the gene name)
Probes
Litterature
PubMed141 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGB3
EVEXCGB3
GoPubMedCGB3
iHOPCGB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:20 CEST 2017

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