Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CGB5 (chorionic gonadotropin beta subunit 5)

Identity

Alias_nameschorionic gonadotropin
Alias_symbol (synonym)HCG
Other aliasCGB
hCGB
HGNC (Hugo) CGB5
LocusID (NCBI) 93659
Atlas_Id 46460
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49547102 and ends at 49548568 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGB5   16452
Cards
Entrez_Gene (NCBI)CGB5  93659  chorionic gonadotropin beta subunit 5
AliasesCGB; HCG; hCGB
GeneCards (Weizmann)CGB5
Ensembl hg19 (Hinxton)ENSG00000189052 [Gene_View]  chr19:49547102-49548568 [Contig_View]  CGB5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189052 [Gene_View]  chr19:49547102-49548568 [Contig_View]  CGB5 [Vega]
ICGC DataPortalENSG00000189052
TCGA cBioPortalCGB5
AceView (NCBI)CGB5
Genatlas (Paris)CGB5
WikiGenes93659
SOURCE (Princeton)CGB5
Genetics Home Reference (NIH)CGB5
Genomic and cartography
GoldenPath hg19 (UCSC)CGB5  -     chr19:49547102-49548568 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CGB5  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblCGB5 - 19q13.33 [CytoView hg19]  CGB5 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICGB5 [Mapview hg19]  CGB5 [Mapview hg38]
OMIM608825   
Gene and transcription
Genbank (Entrez)BC006290 BC051378 BC103970 BC103971 BC106723
RefSeq transcript (Entrez)NM_033043
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CGB5
Cluster EST : UnigeneHs.172944 [ NCBI ]
CGAP (NCI)Hs.172944
Alternative Splicing GalleryENSG00000189052
Gene ExpressionCGB5 [ NCBI-GEO ]   CGB5 [ EBI - ARRAY_EXPRESS ]   CGB5 [ SEEK ]   CGB5 [ MEM ]
Gene Expression Viewer (FireBrowse)CGB5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93659
GTEX Portal (Tissue expression)CGB5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01233   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01233  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01233
Splice isoforms : SwissVarP01233
PhosPhoSitePlusP01233
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Glyco_hormone_CN    Gonadotropin_bsu    Gonadotropin_bsu_CS   
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
Conserved Domain (NCBI)CGB5
DMDM Disease mutations93659
Blocks (Seattle)CGB5
PDB (SRS)1HCN    1HRP    1QFW    1XUL   
PDB (PDBSum)1HCN    1HRP    1QFW    1XUL   
PDB (IMB)1HCN    1HRP    1QFW    1XUL   
PDB (RSDB)1HCN    1HRP    1QFW    1XUL   
Structural Biology KnowledgeBase1HCN    1HRP    1QFW    1XUL   
SCOP (Structural Classification of Proteins)1HCN    1HRP    1QFW    1XUL   
CATH (Classification of proteins structures)1HCN    1HRP    1QFW    1XUL   
SuperfamilyP01233
Human Protein AtlasENSG00000189052
Peptide AtlasP01233
HPRD12309
Protein Interaction databases
DIP (DOE-UCLA)P01233
IntAct (EBI)P01233
FunCoupENSG00000189052
BioGRIDCGB5
STRING (EMBL)CGB5
ZODIACCGB5
Ontologies - Pathways
QuickGOP01233
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCGB5
Atlas of Cancer Signalling NetworkCGB5
Wikipedia pathwaysCGB5
Orthology - Evolution
OrthoDB93659
GeneTree (enSembl)ENSG00000189052
Phylogenetic Trees/Animal Genes : TreeFamCGB5
HOVERGENP01233
HOGENOMP01233
Homologs : HomoloGeneCGB5
Homology/Alignments : Family Browser (UCSC)CGB5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGB5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGB5
dbVarCGB5
ClinVarCGB5
1000_GenomesCGB5 
Exome Variant ServerCGB5
ExAC (Exome Aggregation Consortium)CGB5 (select the gene name)
Genetic variants : HAPMAP93659
Genomic Variants (DGV)CGB5 [DGVbeta]
DECIPHER (Syndromes)19:49547102-49548568  ENSG00000189052
CONAN: Copy Number AnalysisCGB5 
Mutations
ICGC Data PortalCGB5 
TCGA Data PortalCGB5 
Broad Tumor PortalCGB5
OASIS PortalCGB5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGB5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGB5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGB5
DgiDB (Drug Gene Interaction Database)CGB5
DoCM (Curated mutations)CGB5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGB5 (select a term)
intoGenCGB5
Cancer3DCGB5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608825   
Orphanet
MedgenCGB5
Genetic Testing Registry CGB5
NextProtP01233 [Medical]
TSGene93659
GENETestsCGB5
Huge Navigator CGB5 [HugePedia]
snp3D : Map Gene to Disease93659
BioCentury BCIQCGB5
ClinGenCGB5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93659
Chemical/Pharm GKB GenePA26437
Clinical trialCGB5
Miscellaneous
canSAR (ICR)CGB5 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGB5
EVEXCGB5
GoPubMedCGB5
iHOPCGB5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:56:20 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.