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CGB8 (chorionic gonadotropin beta subunit 8)

Identity

Alias_nameschorionic gonadotropin, beta polypeptide 8
Other alias-
HGNC (Hugo) CGB8
LocusID (NCBI) 94115
Atlas_Id 61781
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49047638 and ends at 49049111 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGB8   16453
Cards
Entrez_Gene (NCBI)CGB8  94115  chorionic gonadotropin beta subunit 8
Aliases
GeneCards (Weizmann)CGB8
Ensembl hg19 (Hinxton)ENSG00000213030 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213030 [Gene_View]  chr19:49047638-49049111 [Contig_View]  CGB8 [Vega]
ICGC DataPortalENSG00000213030
TCGA cBioPortalCGB8
AceView (NCBI)CGB8
Genatlas (Paris)CGB8
WikiGenes94115
SOURCE (Princeton)CGB8
Genetics Home Reference (NIH)CGB8
Genomic and cartography
GoldenPath hg38 (UCSC)CGB8  -     chr19:49047638-49049111 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CGB8  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblCGB8 - 19q13.33 [CytoView hg19]  CGB8 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICGB8 [Mapview hg19]  CGB8 [Mapview hg38]
OMIM608827   
Gene and transcription
Genbank (Entrez)BC030994 BC103969 BC128603 BQ011275 BX118262
RefSeq transcript (Entrez)NM_033183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CGB8
Cluster EST : UnigeneHs.743279 [ NCBI ]
CGAP (NCI)Hs.743279
Alternative Splicing GalleryENSG00000213030
Gene ExpressionCGB8 [ NCBI-GEO ]   CGB8 [ EBI - ARRAY_EXPRESS ]   CGB8 [ SEEK ]   CGB8 [ MEM ]
Gene Expression Viewer (FireBrowse)CGB8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94115
GTEX Portal (Tissue expression)CGB8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN86
Splice isoforms : SwissVarP0DN86
PhosPhoSitePlusP0DN86
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Glyco_hormone_CN    Gonadotropin_bsu    Gonadotropin_bsu_CS   
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
Conserved Domain (NCBI)CGB8
DMDM Disease mutations94115
Blocks (Seattle)CGB8
PDB (SRS)1HCN    1HRP    1QFW    1XUL   
PDB (PDBSum)1HCN    1HRP    1QFW    1XUL   
PDB (IMB)1HCN    1HRP    1QFW    1XUL   
PDB (RSDB)1HCN    1HRP    1QFW    1XUL   
Structural Biology KnowledgeBase1HCN    1HRP    1QFW    1XUL   
SCOP (Structural Classification of Proteins)1HCN    1HRP    1QFW    1XUL   
CATH (Classification of proteins structures)1HCN    1HRP    1QFW    1XUL   
SuperfamilyP0DN86
Human Protein AtlasENSG00000213030
Peptide AtlasP0DN86
HPRD12311
Protein Interaction databases
DIP (DOE-UCLA)P0DN86
IntAct (EBI)P0DN86
FunCoupENSG00000213030
BioGRIDCGB8
STRING (EMBL)CGB8
ZODIACCGB8
Ontologies - Pathways
QuickGOP0DN86
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCGB8
Atlas of Cancer Signalling NetworkCGB8
Wikipedia pathwaysCGB8
Orthology - Evolution
OrthoDB94115
GeneTree (enSembl)ENSG00000213030
Phylogenetic Trees/Animal Genes : TreeFamCGB8
HOVERGENP0DN86
HOGENOMP0DN86
Homologs : HomoloGeneCGB8
Homology/Alignments : Family Browser (UCSC)CGB8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGB8
dbVarCGB8
ClinVarCGB8
1000_GenomesCGB8 
Exome Variant ServerCGB8
ExAC (Exome Aggregation Consortium)CGB8 (select the gene name)
Genetic variants : HAPMAP94115
Genomic Variants (DGV)CGB8 [DGVbeta]
DECIPHERCGB8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCGB8 
Mutations
ICGC Data PortalCGB8 
TCGA Data PortalCGB8 
Broad Tumor PortalCGB8
OASIS PortalCGB8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGB8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGB8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGB8
DgiDB (Drug Gene Interaction Database)CGB8
DoCM (Curated mutations)CGB8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGB8 (select a term)
intoGenCGB8
Cancer3DCGB8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608827   
Orphanet
MedgenCGB8
Genetic Testing Registry CGB8
NextProtP0DN86 [Medical]
TSGene94115
GENETestsCGB8
Target ValidationCGB8
Huge Navigator CGB8 [HugePedia]
snp3D : Map Gene to Disease94115
BioCentury BCIQCGB8
ClinGenCGB8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94115
Chemical/Pharm GKB GenePA26439
Clinical trialCGB8
Miscellaneous
canSAR (ICR)CGB8 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGB8
EVEXCGB8
GoPubMedCGB8
iHOPCGB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:44 CEST 2017

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