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CGN (cingulin)

Identity

Alias_symbol (synonym)KIAA1319
Other alias-
HGNC (Hugo) CGN
LocusID (NCBI) 57530
Atlas_Id 52896
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151483862 and ends at 151511167 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CALD1 (7q33) / CGN (1q21.3)CGN (1q21.3) / CGN (1q21.3)SFTPC (8p21.3) / CGN (1q21.3)
TUFT1 (1q21.3) / CGN (1q21.3)CALD1 7q33 / CGN 1q21.3TUFT1 1q21.3 / CGN 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGN   17429
Cards
Entrez_Gene (NCBI)CGN  57530  cingulin
Aliases
GeneCards (Weizmann)CGN
Ensembl hg19 (Hinxton)ENSG00000143375 [Gene_View]  chr1:151483862-151511167 [Contig_View]  CGN [Vega]
Ensembl hg38 (Hinxton)ENSG00000143375 [Gene_View]  chr1:151483862-151511167 [Contig_View]  CGN [Vega]
ICGC DataPortalENSG00000143375
TCGA cBioPortalCGN
AceView (NCBI)CGN
Genatlas (Paris)CGN
WikiGenes57530
SOURCE (Princeton)CGN
Genetics Home Reference (NIH)CGN
Genomic and cartography
GoldenPath hg19 (UCSC)CGN  -     chr1:151483862-151511167 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CGN  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblCGN - 1q21.3 [CytoView hg19]  CGN - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBICGN [Mapview hg19]  CGN [Mapview hg38]
OMIM609473   
Gene and transcription
Genbank (Entrez)AB037740 AF263462 AK290007 BC146657 BC150604
RefSeq transcript (Entrez)NM_020770
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)CGN
Cluster EST : UnigeneHs.591464 [ NCBI ]
CGAP (NCI)Hs.591464
Alternative Splicing GalleryENSG00000143375
Gene ExpressionCGN [ NCBI-GEO ]   CGN [ EBI - ARRAY_EXPRESS ]   CGN [ SEEK ]   CGN [ MEM ]
Gene Expression Viewer (FireBrowse)CGN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57530
GTEX Portal (Tissue expression)CGN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2M7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2M7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2M7
Splice isoforms : SwissVarQ9P2M7
PhosPhoSitePlusQ9P2M7
Domains : Interpro (EBI)Myosin_tail   
Domain families : Pfam (Sanger)Myosin_tail_1 (PF01576)   
Domain families : Pfam (NCBI)pfam01576   
Conserved Domain (NCBI)CGN
DMDM Disease mutations57530
Blocks (Seattle)CGN
SuperfamilyQ9P2M7
Human Protein AtlasENSG00000143375
Peptide AtlasQ9P2M7
HPRD10827
IPIIPI00929635   IPI00844508   IPI00797763   IPI00852984   IPI00915752   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2M7
IntAct (EBI)Q9P2M7
FunCoupENSG00000143375
BioGRIDCGN
STRING (EMBL)CGN
ZODIACCGN
Ontologies - Pathways
QuickGOQ9P2M7
Ontology : AmiGOmotor activity  actin binding  protein binding  bicellular tight junction  bicellular tight junction  transforming growth factor beta receptor signaling pathway  biological_process  metabolic process  myosin complex  cell junction  
Ontology : EGO-EBImotor activity  actin binding  protein binding  bicellular tight junction  bicellular tight junction  transforming growth factor beta receptor signaling pathway  biological_process  metabolic process  myosin complex  cell junction  
Pathways : KEGGTight junction   
NDEx NetworkCGN
Atlas of Cancer Signalling NetworkCGN
Wikipedia pathwaysCGN
Orthology - Evolution
OrthoDB57530
GeneTree (enSembl)ENSG00000143375
Phylogenetic Trees/Animal Genes : TreeFamCGN
HOVERGENQ9P2M7
HOGENOMQ9P2M7
Homologs : HomoloGeneCGN
Homology/Alignments : Family Browser (UCSC)CGN
Gene fusions - Rearrangements
Fusion : MitelmanCALD1/CGN [7q33/1q21.3]  [t(1;7)(q21;q33)]  
Fusion : MitelmanTUFT1/CGN [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion: TCGACALD1 7q33 CGN 1q21.3 KIRC
Fusion: TCGATUFT1 1q21.3 CGN 1q21.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGN
dbVarCGN
ClinVarCGN
1000_GenomesCGN 
Exome Variant ServerCGN
ExAC (Exome Aggregation Consortium)CGN (select the gene name)
Genetic variants : HAPMAP57530
Genomic Variants (DGV)CGN [DGVbeta]
DECIPHER (Syndromes)1:151483862-151511167  ENSG00000143375
CONAN: Copy Number AnalysisCGN 
Mutations
ICGC Data PortalCGN 
TCGA Data PortalCGN 
Broad Tumor PortalCGN
OASIS PortalCGN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGN
DgiDB (Drug Gene Interaction Database)CGN
DoCM (Curated mutations)CGN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGN (select a term)
intoGenCGN
Cancer3DCGN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609473   
Orphanet
MedgenCGN
Genetic Testing Registry CGN
NextProtQ9P2M7 [Medical]
TSGene57530
GENETestsCGN
Huge Navigator CGN [HugePedia]
snp3D : Map Gene to Disease57530
BioCentury BCIQCGN
ClinGenCGN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57530
Chemical/Pharm GKB GenePA134938123
Clinical trialCGN
Miscellaneous
canSAR (ICR)CGN (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGN
EVEXCGN
GoPubMedCGN
iHOPCGN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:14 CET 2017

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