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CGNL1 (cingulin-like 1)

Identity

Alias_symbol (synonym)FLJ14957
JACOP
KIAA1749
PCING
Other alias
HGNC (Hugo) CGNL1
LocusID (NCBI) 84952
Atlas_Id 61782
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 57668703 and ends at 57842925 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CGNL1 (15q21.3) / GPR173 (Xp11.22)CGNL1 (15q21.3) / HTN3 (4q13.3)CGNL1 (15q21.3) / TBC1D22A (22q13.31)
CGNL1 (15q21.3) / TCF12 (15q21.3)ENTPD6 (20p11.21) / CGNL1 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGNL1   25931
Cards
Entrez_Gene (NCBI)CGNL1  84952  cingulin-like 1
AliasesJACOP
GeneCards (Weizmann)CGNL1
Ensembl hg19 (Hinxton)ENSG00000128849 [Gene_View]  chr15:57668703-57842925 [Contig_View]  CGNL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128849 [Gene_View]  chr15:57668703-57842925 [Contig_View]  CGNL1 [Vega]
ICGC DataPortalENSG00000128849
TCGA cBioPortalCGNL1
AceView (NCBI)CGNL1
Genatlas (Paris)CGNL1
WikiGenes84952
SOURCE (Princeton)CGNL1
Genetics Home Reference (NIH)CGNL1
Genomic and cartography
GoldenPath hg19 (UCSC)CGNL1  -     chr15:57668703-57842925 +  15q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CGNL1  -     15q21.3   [Description]    (hg38-Dec_2013)
EnsemblCGNL1 - 15q21.3 [CytoView hg19]  CGNL1 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBICGNL1 [Mapview hg19]  CGNL1 [Mapview hg38]
OMIM607856   
Gene and transcription
Genbank (Entrez)AA661765 AB051536 AK027025 AK027863 AK056673
RefSeq transcript (Entrez)NM_001252335 NM_032866
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_030584 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)CGNL1
Cluster EST : UnigeneHs.734541 [ NCBI ]
CGAP (NCI)Hs.734541
Alternative Splicing GalleryENSG00000128849
Gene ExpressionCGNL1 [ NCBI-GEO ]   CGNL1 [ EBI - ARRAY_EXPRESS ]   CGNL1 [ SEEK ]   CGNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CGNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84952
GTEX Portal (Tissue expression)CGNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VF96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VF96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VF96
Splice isoforms : SwissVarQ0VF96
PhosPhoSitePlusQ0VF96
Domains : Interpro (EBI)Myosin_tail   
Domain families : Pfam (Sanger)Myosin_tail_1 (PF01576)   
Domain families : Pfam (NCBI)pfam01576   
Conserved Domain (NCBI)CGNL1
DMDM Disease mutations84952
Blocks (Seattle)CGNL1
SuperfamilyQ0VF96
Human Protein AtlasENSG00000128849
Peptide AtlasQ0VF96
HPRD09708
IPIIPI00307829   IPI00877055   
Protein Interaction databases
DIP (DOE-UCLA)Q0VF96
IntAct (EBI)Q0VF96
FunCoupENSG00000128849
BioGRIDCGNL1
STRING (EMBL)CGNL1
ZODIACCGNL1
Ontologies - Pathways
QuickGOQ0VF96
Ontology : AmiGOmotor activity  bicellular tight junction  metabolic process  myosin complex  
Ontology : EGO-EBImotor activity  bicellular tight junction  metabolic process  myosin complex  
NDEx NetworkCGNL1
Atlas of Cancer Signalling NetworkCGNL1
Wikipedia pathwaysCGNL1
Orthology - Evolution
OrthoDB84952
GeneTree (enSembl)ENSG00000128849
Phylogenetic Trees/Animal Genes : TreeFamCGNL1
HOVERGENQ0VF96
HOGENOMQ0VF96
Homologs : HomoloGeneCGNL1
Homology/Alignments : Family Browser (UCSC)CGNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGNL1
dbVarCGNL1
ClinVarCGNL1
1000_GenomesCGNL1 
Exome Variant ServerCGNL1
ExAC (Exome Aggregation Consortium)CGNL1 (select the gene name)
Genetic variants : HAPMAP84952
Genomic Variants (DGV)CGNL1 [DGVbeta]
DECIPHER (Syndromes)15:57668703-57842925  ENSG00000128849
CONAN: Copy Number AnalysisCGNL1 
Mutations
ICGC Data PortalCGNL1 
TCGA Data PortalCGNL1 
Broad Tumor PortalCGNL1
OASIS PortalCGNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGNL1
DgiDB (Drug Gene Interaction Database)CGNL1
DoCM (Curated mutations)CGNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGNL1 (select a term)
intoGenCGNL1
Cancer3DCGNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607856   
Orphanet
MedgenCGNL1
Genetic Testing Registry CGNL1
NextProtQ0VF96 [Medical]
TSGene84952
GENETestsCGNL1
Huge Navigator CGNL1 [HugePedia]
snp3D : Map Gene to Disease84952
BioCentury BCIQCGNL1
ClinGenCGNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84952
Chemical/Pharm GKB GenePA134972287
Clinical trialCGNL1
Miscellaneous
canSAR (ICR)CGNL1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGNL1
EVEXCGNL1
GoPubMedCGNL1
iHOPCGNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:59:22 CET 2017

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