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CGREF1 (cell growth regulator with EF-hand domain 1)

Identity

Alias_symbol (synonym)CGR11
Other alias
HGNC (Hugo) CGREF1
LocusID (NCBI) 10669
Atlas_Id 56479
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27100594 and ends at 27119127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGREF1   16962
Cards
Entrez_Gene (NCBI)CGREF1  10669  cell growth regulator with EF-hand domain 1
AliasesCGR11
GeneCards (Weizmann)CGREF1
Ensembl hg19 (Hinxton)ENSG00000138028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138028 [Gene_View]  ENSG00000138028 [Sequence]  chr2:27100594-27119127 [Contig_View]  CGREF1 [Vega]
ICGC DataPortalENSG00000138028
TCGA cBioPortalCGREF1
AceView (NCBI)CGREF1
Genatlas (Paris)CGREF1
WikiGenes10669
SOURCE (Princeton)CGREF1
Genetics Home Reference (NIH)CGREF1
Genomic and cartography
GoldenPath hg38 (UCSC)CGREF1  -     chr2:27100594-27119127 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CGREF1  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblCGREF1 - 2p23.3 [CytoView hg19]  CGREF1 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBICGREF1 [Mapview hg19]  CGREF1 [Mapview hg38]
OMIM606137   
Gene and transcription
Genbank (Entrez)AI870942 AK290128 AK302185 AK309147 AL536349
RefSeq transcript (Entrez)NM_001166239 NM_001166240 NM_001166241 NM_001301324 NM_006569
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CGREF1
Cluster EST : UnigeneHs.159525 [ NCBI ]
CGAP (NCI)Hs.159525
Alternative Splicing GalleryENSG00000138028
Gene ExpressionCGREF1 [ NCBI-GEO ]   CGREF1 [ EBI - ARRAY_EXPRESS ]   CGREF1 [ SEEK ]   CGREF1 [ MEM ]
Gene Expression Viewer (FireBrowse)CGREF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10669
GTEX Portal (Tissue expression)CGREF1
Human Protein AtlasENSG00000138028-CGREF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99674   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99674  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99674
Splice isoforms : SwissVarQ99674
PhosPhoSitePlusQ99674
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Conserved Domain (NCBI)CGREF1
DMDM Disease mutations10669
Blocks (Seattle)CGREF1
SuperfamilyQ99674
Human Protein Atlas [tissue]ENSG00000138028-CGREF1 [tissue]
Peptide AtlasQ99674
HPRD09365
IPIIPI00337548   IPI00910562   IPI00903089   IPI00893102   IPI00893171   IPI00892572   
Protein Interaction databases
DIP (DOE-UCLA)Q99674
IntAct (EBI)Q99674
FunCoupENSG00000138028
BioGRIDCGREF1
STRING (EMBL)CGREF1
ZODIACCGREF1
Ontologies - Pathways
QuickGOQ99674
Ontology : AmiGOcalcium ion binding  extracellular region  cell cycle arrest  cell adhesion  negative regulation of cell proliferation  
Ontology : EGO-EBIcalcium ion binding  extracellular region  cell cycle arrest  cell adhesion  negative regulation of cell proliferation  
NDEx NetworkCGREF1
Atlas of Cancer Signalling NetworkCGREF1
Wikipedia pathwaysCGREF1
Orthology - Evolution
OrthoDB10669
GeneTree (enSembl)ENSG00000138028
Phylogenetic Trees/Animal Genes : TreeFamCGREF1
HOVERGENQ99674
HOGENOMQ99674
Homologs : HomoloGeneCGREF1
Homology/Alignments : Family Browser (UCSC)CGREF1
Gene fusions - Rearrangements
Fusion : QuiverCGREF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGREF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGREF1
dbVarCGREF1
ClinVarCGREF1
1000_GenomesCGREF1 
Exome Variant ServerCGREF1
ExAC (Exome Aggregation Consortium)ENSG00000138028
GNOMAD BrowserENSG00000138028
Varsome BrowserCGREF1
Genetic variants : HAPMAP10669
Genomic Variants (DGV)CGREF1 [DGVbeta]
DECIPHERCGREF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCGREF1 
Mutations
ICGC Data PortalCGREF1 
TCGA Data PortalCGREF1 
Broad Tumor PortalCGREF1
OASIS PortalCGREF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGREF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGREF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGREF1
DgiDB (Drug Gene Interaction Database)CGREF1
DoCM (Curated mutations)CGREF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGREF1 (select a term)
intoGenCGREF1
Cancer3DCGREF1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606137   
Orphanet
DisGeNETCGREF1
MedgenCGREF1
Genetic Testing Registry CGREF1
NextProtQ99674 [Medical]
TSGene10669
GENETestsCGREF1
Target ValidationCGREF1
Huge Navigator CGREF1 [HugePedia]
snp3D : Map Gene to Disease10669
BioCentury BCIQCGREF1
ClinGenCGREF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10669
Chemical/Pharm GKB GenePA134984105
Clinical trialCGREF1
Miscellaneous
canSAR (ICR)CGREF1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGREF1
EVEXCGREF1
GoPubMedCGREF1
iHOPCGREF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:57:58 CET 2018

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