Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CGRRF1 (cell growth regulator with ring finger domain 1)

Identity

Alias_symbol (synonym)CGR19
RNF197
Other alias
HGNC (Hugo) CGRRF1
LocusID (NCBI) 10668
Atlas_Id 40066
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 54976587 and ends at 55005334 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CGRRF1 (14q22.2) / WDHD1 (14q22.2)DTD2 (14q12) / CGRRF1 (14q22.2)C14orf126 CGRRF1 14q22.2
CGRRF1 14q22.2 / WDHD1 14q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CGRRF1   15528
Cards
Entrez_Gene (NCBI)CGRRF1  10668  cell growth regulator with ring finger domain 1
AliasesCGR19; RNF197
GeneCards (Weizmann)CGRRF1
Ensembl hg19 (Hinxton)ENSG00000100532 [Gene_View]  chr14:54976587-55005334 [Contig_View]  CGRRF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100532 [Gene_View]  chr14:54976587-55005334 [Contig_View]  CGRRF1 [Vega]
ICGC DataPortalENSG00000100532
TCGA cBioPortalCGRRF1
AceView (NCBI)CGRRF1
Genatlas (Paris)CGRRF1
WikiGenes10668
SOURCE (Princeton)CGRRF1
Genetics Home Reference (NIH)CGRRF1
Genomic and cartography
GoldenPath hg19 (UCSC)CGRRF1  -     chr14:54976587-55005334 +  14q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CGRRF1  -     14q22.2   [Description]    (hg38-Dec_2013)
EnsemblCGRRF1 - 14q22.2 [CytoView hg19]  CGRRF1 - 14q22.2 [CytoView hg38]
Mapping of homologs : NCBICGRRF1 [Mapview hg19]  CGRRF1 [Mapview hg38]
OMIM606138   
Gene and transcription
Genbank (Entrez)AK090727 AK289478 AK315318 AW664053 BC015063
RefSeq transcript (Entrez)NM_006568
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)CGRRF1
Cluster EST : UnigeneHs.59106 [ NCBI ]
CGAP (NCI)Hs.59106
Alternative Splicing GalleryENSG00000100532
Gene ExpressionCGRRF1 [ NCBI-GEO ]   CGRRF1 [ EBI - ARRAY_EXPRESS ]   CGRRF1 [ SEEK ]   CGRRF1 [ MEM ]
Gene Expression Viewer (FireBrowse)CGRRF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10668
GTEX Portal (Tissue expression)CGRRF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99675   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99675  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99675
Splice isoforms : SwissVarQ99675
PhosPhoSitePlusQ99675
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)CGRRF1
DMDM Disease mutations10668
Blocks (Seattle)CGRRF1
PDB (SRS)2EA5   
PDB (PDBSum)2EA5   
PDB (IMB)2EA5   
PDB (RSDB)2EA5   
Structural Biology KnowledgeBase2EA5   
SCOP (Structural Classification of Proteins)2EA5   
CATH (Classification of proteins structures)2EA5   
SuperfamilyQ99675
Human Protein AtlasENSG00000100532
Peptide AtlasQ99675
HPRD09366
IPIIPI00008581   IPI01025191   IPI01025168   IPI01024814   
Protein Interaction databases
DIP (DOE-UCLA)Q99675
IntAct (EBI)Q99675
FunCoupENSG00000100532
BioGRIDCGRRF1
STRING (EMBL)CGRRF1
ZODIACCGRRF1
Ontologies - Pathways
QuickGOQ99675
Ontology : AmiGOnucleoplasm  response to stress  cell cycle arrest  zinc ion binding  negative regulation of cell proliferation  intracellular membrane-bounded organelle  
Ontology : EGO-EBInucleoplasm  response to stress  cell cycle arrest  zinc ion binding  negative regulation of cell proliferation  intracellular membrane-bounded organelle  
NDEx NetworkCGRRF1
Atlas of Cancer Signalling NetworkCGRRF1
Wikipedia pathwaysCGRRF1
Orthology - Evolution
OrthoDB10668
GeneTree (enSembl)ENSG00000100532
Phylogenetic Trees/Animal Genes : TreeFamCGRRF1
HOVERGENQ99675
HOGENOMQ99675
Homologs : HomoloGeneCGRRF1
Homology/Alignments : Family Browser (UCSC)CGRRF1
Gene fusions - Rearrangements
Fusion : MitelmanCGRRF1/WDHD1 [14q22.2/14q22.2]  
Fusion : MitelmanDTD2/CGRRF1 [14q12/14q22.2]  [t(14;14)(q12;q22)]  
Fusion: TCGAC14orf126 CGRRF1 14q22.2 SKCM
Fusion: TCGACGRRF1 14q22.2 WDHD1 14q22.2 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGRRF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CGRRF1
dbVarCGRRF1
ClinVarCGRRF1
1000_GenomesCGRRF1 
Exome Variant ServerCGRRF1
ExAC (Exome Aggregation Consortium)CGRRF1 (select the gene name)
Genetic variants : HAPMAP10668
Genomic Variants (DGV)CGRRF1 [DGVbeta]
DECIPHER (Syndromes)14:54976587-55005334  ENSG00000100532
CONAN: Copy Number AnalysisCGRRF1 
Mutations
ICGC Data PortalCGRRF1 
TCGA Data PortalCGRRF1 
Broad Tumor PortalCGRRF1
OASIS PortalCGRRF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGRRF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCGRRF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGRRF1
DgiDB (Drug Gene Interaction Database)CGRRF1
DoCM (Curated mutations)CGRRF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGRRF1 (select a term)
intoGenCGRRF1
Cancer3DCGRRF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606138   
Orphanet
MedgenCGRRF1
Genetic Testing Registry CGRRF1
NextProtQ99675 [Medical]
TSGene10668
GENETestsCGRRF1
Huge Navigator CGRRF1 [HugePedia]
snp3D : Map Gene to Disease10668
BioCentury BCIQCGRRF1
ClinGenCGRRF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10668
Chemical/Pharm GKB GenePA134985671
Clinical trialCGRRF1
Miscellaneous
canSAR (ICR)CGRRF1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGRRF1
EVEXCGRRF1
GoPubMedCGRRF1
iHOPCGRRF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:21 CEST 2017

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