Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CH17-340M24.3 (uncharacterized protein BC009467)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 158960
Atlas_Id 67842
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154424380 and ends at 154428479 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)CH17-340M24.3  158960  uncharacterized protein BC009467
Aliases
GeneCards (Weizmann)CH17-340M24.3
Ensembl hg19 (Hinxton)ENSG00000197180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197180 [Gene_View]  chrX:154424380-154428479 [Contig_View]  CH17-340M24.3 [Vega]
ICGC DataPortalENSG00000197180
TCGA cBioPortalCH17-340M24.3
AceView (NCBI)CH17-340M24.3
Genatlas (Paris)CH17-340M24.3
WikiGenes158960
SOURCE (Princeton)CH17-340M24.3
Genetics Home Reference (NIH)CH17-340M24.3
Genomic and cartography
GoldenPath hg38 (UCSC)CH17-340M24.3  -     chrX:154424380-154428479 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CH17-340M24.3  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCH17-340M24.3 - Xq28 [CytoView hg19]  CH17-340M24.3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICH17-340M24.3 [Mapview hg19]  CH17-340M24.3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009467 BF674246 BQ889876
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CH17-340M24.3
Cluster EST : UnigeneHs.553131 [ NCBI ]
CGAP (NCI)Hs.553131
Alternative Splicing GalleryENSG00000197180
Gene ExpressionCH17-340M24.3 [ NCBI-GEO ]   CH17-340M24.3 [ EBI - ARRAY_EXPRESS ]   CH17-340M24.3 [ SEEK ]   CH17-340M24.3 [ MEM ]
Gene Expression Viewer (FireBrowse)CH17-340M24.3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)158960
GTEX Portal (Tissue expression)CH17-340M24.3
Human Protein AtlasENSG00000197180-CH17-340M24.3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CH17-340M24.3
DMDM Disease mutations158960
Blocks (Seattle)CH17-340M24.3
Human Protein Atlas [tissue]ENSG00000197180-CH17-340M24.3 [tissue]
IPIIPI00101497   
Protein Interaction databases
FunCoupENSG00000197180
BioGRIDCH17-340M24.3
STRING (EMBL)CH17-340M24.3
ZODIACCH17-340M24.3
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease158960
BioCentury BCIQCH17-340M24.3
ClinGenCH17-340M24.3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158960
Clinical trialCH17-340M24.3
Miscellaneous
canSAR (ICR)CH17-340M24.3 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCH17-340M24.3
EVEXCH17-340M24.3
GoPubMedCH17-340M24.3
iHOPCH17-340M24.3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:24:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.