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CHAC2 (ChaC cation transport regulator homolog 2)

Identity

Alias_namesChaC, cation transport regulator-like 2 (E. coli)
ChaC, cation transport regulator homolog 2 (E. coli)
Other alias-
HGNC (Hugo) CHAC2
LocusID (NCBI) 494143
Atlas_Id 61785
Location 2p16.2  [Link to chromosome band 2p16]
Location_base_pair Starts at 53767783 and ends at 53775196 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHAC2   32363
Cards
Entrez_Gene (NCBI)CHAC2  494143  ChaC cation transport regulator homolog 2
Aliases
GeneCards (Weizmann)CHAC2
Ensembl hg19 (Hinxton)ENSG00000143942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143942 [Gene_View]  chr2:53767783-53775196 [Contig_View]  CHAC2 [Vega]
ICGC DataPortalENSG00000143942
TCGA cBioPortalCHAC2
AceView (NCBI)CHAC2
Genatlas (Paris)CHAC2
WikiGenes494143
SOURCE (Princeton)CHAC2
Genetics Home Reference (NIH)CHAC2
Genomic and cartography
GoldenPath hg38 (UCSC)CHAC2  -     chr2:53767783-53775196 +  2p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHAC2  -     2p16.2   [Description]    (hg19-Feb_2009)
EnsemblCHAC2 - 2p16.2 [CytoView hg19]  CHAC2 - 2p16.2 [CytoView hg38]
Mapping of homologs : NCBICHAC2 [Mapview hg19]  CHAC2 [Mapview hg38]
OMIM617446   
Gene and transcription
Genbank (Entrez)AA465572 BC017941 BC019239 BC025376 BC053896
RefSeq transcript (Entrez)NM_001008708 NM_001346127
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHAC2
Cluster EST : UnigeneHs.585944 [ NCBI ]
CGAP (NCI)Hs.585944
Alternative Splicing GalleryENSG00000143942
Gene ExpressionCHAC2 [ NCBI-GEO ]   CHAC2 [ EBI - ARRAY_EXPRESS ]   CHAC2 [ SEEK ]   CHAC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CHAC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494143
GTEX Portal (Tissue expression)CHAC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUX2
Splice isoforms : SwissVarQ8WUX2
PhosPhoSitePlusQ8WUX2
Domains : Interpro (EBI)ChaC    GGCT-like   
Domain families : Pfam (Sanger)ChaC (PF04752)   
Domain families : Pfam (NCBI)pfam04752   
Conserved Domain (NCBI)CHAC2
DMDM Disease mutations494143
Blocks (Seattle)CHAC2
SuperfamilyQ8WUX2
Human Protein AtlasENSG00000143942
Peptide AtlasQ8WUX2
HPRD17418
IPIIPI00103047   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUX2
IntAct (EBI)Q8WUX2
FunCoupENSG00000143942
BioGRIDCHAC2
STRING (EMBL)CHAC2
ZODIACCHAC2
Ontologies - Pathways
QuickGOQ8WUX2
Ontology : AmiGOmolecular_function  gamma-glutamylcyclotransferase activity  gamma-glutamylcyclotransferase activity  cellular_component  cytoplasm  cytosol  glutathione biosynthetic process  glutathione catabolic process  biological_process  
Ontology : EGO-EBImolecular_function  gamma-glutamylcyclotransferase activity  gamma-glutamylcyclotransferase activity  cellular_component  cytoplasm  cytosol  glutathione biosynthetic process  glutathione catabolic process  biological_process  
NDEx NetworkCHAC2
Atlas of Cancer Signalling NetworkCHAC2
Wikipedia pathwaysCHAC2
Orthology - Evolution
OrthoDB494143
GeneTree (enSembl)ENSG00000143942
Phylogenetic Trees/Animal Genes : TreeFamCHAC2
HOVERGENQ8WUX2
HOGENOMQ8WUX2
Homologs : HomoloGeneCHAC2
Homology/Alignments : Family Browser (UCSC)CHAC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHAC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHAC2
dbVarCHAC2
ClinVarCHAC2
1000_GenomesCHAC2 
Exome Variant ServerCHAC2
ExAC (Exome Aggregation Consortium)CHAC2 (select the gene name)
Genetic variants : HAPMAP494143
Genomic Variants (DGV)CHAC2 [DGVbeta]
DECIPHERCHAC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHAC2 
Mutations
ICGC Data PortalCHAC2 
TCGA Data PortalCHAC2 
Broad Tumor PortalCHAC2
OASIS PortalCHAC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHAC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHAC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHAC2
DgiDB (Drug Gene Interaction Database)CHAC2
DoCM (Curated mutations)CHAC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHAC2 (select a term)
intoGenCHAC2
Cancer3DCHAC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617446   
Orphanet
MedgenCHAC2
Genetic Testing Registry CHAC2
NextProtQ8WUX2 [Medical]
TSGene494143
GENETestsCHAC2
Target ValidationCHAC2
Huge Navigator CHAC2 [HugePedia]
snp3D : Map Gene to Disease494143
BioCentury BCIQCHAC2
ClinGenCHAC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494143
Chemical/Pharm GKB GenePA142672120
Clinical trialCHAC2
Miscellaneous
canSAR (ICR)CHAC2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHAC2
EVEXCHAC2
GoPubMedCHAC2
iHOPCHAC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:45 CEST 2017

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