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CHAD (chondroadherin)

Identity

Alias_symbol (synonym)SLRR4A
Other alias
HGNC (Hugo) CHAD
LocusID (NCBI) 1101
Atlas_Id 61786
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50464492 and ends at 50468866 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHAD   1909
Cards
Entrez_Gene (NCBI)CHAD  1101  chondroadherin
AliasesSLRR4A
GeneCards (Weizmann)CHAD
Ensembl hg19 (Hinxton)ENSG00000136457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136457 [Gene_View]  chr17:50464492-50468866 [Contig_View]  CHAD [Vega]
ICGC DataPortalENSG00000136457
TCGA cBioPortalCHAD
AceView (NCBI)CHAD
Genatlas (Paris)CHAD
WikiGenes1101
SOURCE (Princeton)CHAD
Genetics Home Reference (NIH)CHAD
Genomic and cartography
GoldenPath hg38 (UCSC)CHAD  -     chr17:50464492-50468866 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHAD  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblCHAD - 17q21.33 [CytoView hg19]  CHAD - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBICHAD [Mapview hg19]  CHAD [Mapview hg38]
OMIM602178   
Gene and transcription
Genbank (Entrez)AF371328 AK292177 BC036360 BC073974 BQ181527
RefSeq transcript (Entrez)NM_001267
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHAD
Cluster EST : UnigeneHs.97220 [ NCBI ]
CGAP (NCI)Hs.97220
Alternative Splicing GalleryENSG00000136457
Gene ExpressionCHAD [ NCBI-GEO ]   CHAD [ EBI - ARRAY_EXPRESS ]   CHAD [ SEEK ]   CHAD [ MEM ]
Gene Expression Viewer (FireBrowse)CHAD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1101
GTEX Portal (Tissue expression)CHAD
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15335   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15335  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15335
Splice isoforms : SwissVarO15335
PhosPhoSitePlusO15335
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam00560    pfam13855    pfam01462   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)CHAD
DMDM Disease mutations1101
Blocks (Seattle)CHAD
PDB (SRS)5LFN   
PDB (PDBSum)5LFN   
PDB (IMB)5LFN   
PDB (RSDB)5LFN   
Structural Biology KnowledgeBase5LFN   
SCOP (Structural Classification of Proteins)5LFN   
CATH (Classification of proteins structures)5LFN   
SuperfamilyO15335
Human Protein AtlasENSG00000136457
Peptide AtlasO15335
HPRD03711
IPIIPI00014592   IPI00967601   
Protein Interaction databases
DIP (DOE-UCLA)O15335
IntAct (EBI)O15335
FunCoupENSG00000136457
BioGRIDCHAD
STRING (EMBL)CHAD
ZODIACCHAD
Ontologies - Pathways
QuickGOO15335
Ontology : AmiGOprotein kinase inhibitor activity  proteinaceous extracellular matrix  cytoplasm  negative regulation of protein kinase activity  cytokine-mediated signaling pathway  negative regulation of JAK-STAT cascade  bone development  negative regulation of bone trabecula formation  
Ontology : EGO-EBIprotein kinase inhibitor activity  proteinaceous extracellular matrix  cytoplasm  negative regulation of protein kinase activity  cytokine-mediated signaling pathway  negative regulation of JAK-STAT cascade  bone development  negative regulation of bone trabecula formation  
Pathways : KEGGPI3K-Akt signaling pathway    Focal adhesion    ECM-receptor interaction   
NDEx NetworkCHAD
Atlas of Cancer Signalling NetworkCHAD
Wikipedia pathwaysCHAD
Orthology - Evolution
OrthoDB1101
GeneTree (enSembl)ENSG00000136457
Phylogenetic Trees/Animal Genes : TreeFamCHAD
HOVERGENO15335
HOGENOMO15335
Homologs : HomoloGeneCHAD
Homology/Alignments : Family Browser (UCSC)CHAD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHAD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHAD
dbVarCHAD
ClinVarCHAD
1000_GenomesCHAD 
Exome Variant ServerCHAD
ExAC (Exome Aggregation Consortium)CHAD (select the gene name)
Genetic variants : HAPMAP1101
Genomic Variants (DGV)CHAD [DGVbeta]
DECIPHERCHAD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHAD 
Mutations
ICGC Data PortalCHAD 
TCGA Data PortalCHAD 
Broad Tumor PortalCHAD
OASIS PortalCHAD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHAD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHAD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHAD
DgiDB (Drug Gene Interaction Database)CHAD
DoCM (Curated mutations)CHAD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHAD (select a term)
intoGenCHAD
Cancer3DCHAD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602178   
Orphanet
MedgenCHAD
Genetic Testing Registry CHAD
NextProtO15335 [Medical]
TSGene1101
GENETestsCHAD
Target ValidationCHAD
Huge Navigator CHAD [HugePedia]
snp3D : Map Gene to Disease1101
BioCentury BCIQCHAD
ClinGenCHAD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1101
Chemical/Pharm GKB GenePA26445
Clinical trialCHAD
Miscellaneous
canSAR (ICR)CHAD (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHAD
EVEXCHAD
GoPubMedCHAD
iHOPCHAD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:32 CEST 2017

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