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CHADL (chondroadherin like)

Identity

Alias_nameschondroadherin-like
Alias_symbol (synonym)SLRR4B
Other alias
HGNC (Hugo) CHADL
LocusID (NCBI) 150356
Atlas_Id 61787
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41229510 and ends at 41240931 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHADL   25165
Cards
Entrez_Gene (NCBI)CHADL  150356  chondroadherin like
AliasesSLRR4B
GeneCards (Weizmann)CHADL
Ensembl hg19 (Hinxton)ENSG00000100399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100399 [Gene_View]  chr22:41229510-41240931 [Contig_View]  CHADL [Vega]
ICGC DataPortalENSG00000100399
TCGA cBioPortalCHADL
AceView (NCBI)CHADL
Genatlas (Paris)CHADL
WikiGenes150356
SOURCE (Princeton)CHADL
Genetics Home Reference (NIH)CHADL
Genomic and cartography
GoldenPath hg38 (UCSC)CHADL  -     chr22:41229510-41240931 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHADL  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblCHADL - 22q13.2 [CytoView hg19]  CHADL - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBICHADL [Mapview hg19]  CHADL [Mapview hg38]
OMIM616236   
Gene and transcription
Genbank (Entrez)BC012882 BC019839 BC040188 BC048421 BC068590
RefSeq transcript (Entrez)NM_138481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHADL
Cluster EST : UnigeneHs.344488 [ NCBI ]
CGAP (NCI)Hs.344488
Alternative Splicing GalleryENSG00000100399
Gene ExpressionCHADL [ NCBI-GEO ]   CHADL [ EBI - ARRAY_EXPRESS ]   CHADL [ SEEK ]   CHADL [ MEM ]
Gene Expression Viewer (FireBrowse)CHADL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150356
GTEX Portal (Tissue expression)CHADL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUI6
Splice isoforms : SwissVarQ6NUI6
PhosPhoSitePlusQ6NUI6
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)CHADL
DMDM Disease mutations150356
Blocks (Seattle)CHADL
SuperfamilyQ6NUI6
Human Protein AtlasENSG00000100399
Peptide AtlasQ6NUI6
IPIIPI00402280   IPI00855816   IPI00980960   IPI00878244   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUI6
IntAct (EBI)Q6NUI6
FunCoupENSG00000100399
BioGRIDCHADL
STRING (EMBL)CHADL
ZODIACCHADL
Ontologies - Pathways
QuickGOQ6NUI6
Ontology : AmiGOcollagen binding  proteinaceous extracellular matrix  extracellular matrix  extracellular matrix  negative regulation of chondrocyte differentiation  collagen fibril binding  negative regulation of collagen fibril organization  
Ontology : EGO-EBIcollagen binding  proteinaceous extracellular matrix  extracellular matrix  extracellular matrix  negative regulation of chondrocyte differentiation  collagen fibril binding  negative regulation of collagen fibril organization  
NDEx NetworkCHADL
Atlas of Cancer Signalling NetworkCHADL
Wikipedia pathwaysCHADL
Orthology - Evolution
OrthoDB150356
GeneTree (enSembl)ENSG00000100399
Phylogenetic Trees/Animal Genes : TreeFamCHADL
HOVERGENQ6NUI6
HOGENOMQ6NUI6
Homologs : HomoloGeneCHADL
Homology/Alignments : Family Browser (UCSC)CHADL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHADL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHADL
dbVarCHADL
ClinVarCHADL
1000_GenomesCHADL 
Exome Variant ServerCHADL
ExAC (Exome Aggregation Consortium)CHADL (select the gene name)
Genetic variants : HAPMAP150356
Genomic Variants (DGV)CHADL [DGVbeta]
DECIPHERCHADL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHADL 
Mutations
ICGC Data PortalCHADL 
TCGA Data PortalCHADL 
Broad Tumor PortalCHADL
OASIS PortalCHADL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHADL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHADL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHADL
DgiDB (Drug Gene Interaction Database)CHADL
DoCM (Curated mutations)CHADL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHADL (select a term)
intoGenCHADL
Cancer3DCHADL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616236   
Orphanet
MedgenCHADL
Genetic Testing Registry CHADL
NextProtQ6NUI6 [Medical]
TSGene150356
GENETestsCHADL
Target ValidationCHADL
Huge Navigator CHADL [HugePedia]
snp3D : Map Gene to Disease150356
BioCentury BCIQCHADL
ClinGenCHADL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150356
Chemical/Pharm GKB GenePA162382224
Clinical trialCHADL
Miscellaneous
canSAR (ICR)CHADL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHADL
EVEXCHADL
GoPubMedCHADL
iHOPCHADL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:32 CEST 2017

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