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CHAF1A (chromatin assembly factor 1 subunit A)

Identity

Alias_nameschromatin assembly factor 1
Alias_symbol (synonym)CAF1P150
CAF1B
CAF-1
CAF1
P150
MGC71229
Other alias
HGNC (Hugo) CHAF1A
LocusID (NCBI) 10036
Atlas_Id 40067
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4402663 and ends at 4443397 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHAF1A (19p13.3) / CCDC94 (19p13.3)CHAF1A (19p13.3) / CCND1 (11q13.3)CHAF1A (19p13.3) / KDM4B (19p13.3)
KDM4B (19p13.3) / CHAF1A (19p13.3)CHAF1A 19p13.3 / CCDC94 19p13.3KDM4B 19p13.3 / CHAF1A 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHAF1A   1910
Cards
Entrez_Gene (NCBI)CHAF1A  10036  chromatin assembly factor 1 subunit A
AliasesCAF-1; CAF1; CAF1B; CAF1P150; 
P150
GeneCards (Weizmann)CHAF1A
Ensembl hg19 (Hinxton)ENSG00000167670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167670 [Gene_View]  chr19:4402663-4443397 [Contig_View]  CHAF1A [Vega]
ICGC DataPortalENSG00000167670
TCGA cBioPortalCHAF1A
AceView (NCBI)CHAF1A
Genatlas (Paris)CHAF1A
WikiGenes10036
SOURCE (Princeton)CHAF1A
Genetics Home Reference (NIH)CHAF1A
Genomic and cartography
GoldenPath hg38 (UCSC)CHAF1A  -     chr19:4402663-4443397 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHAF1A  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCHAF1A - 19p13.3 [CytoView hg19]  CHAF1A - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICHAF1A [Mapview hg19]  CHAF1A [Mapview hg38]
OMIM601246   
Gene and transcription
Genbank (Entrez)AA576757 BC005813 BC011560 BC041606 BC052620
RefSeq transcript (Entrez)NM_005483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHAF1A
Cluster EST : UnigeneHs.79018 [ NCBI ]
CGAP (NCI)Hs.79018
Alternative Splicing GalleryENSG00000167670
Gene ExpressionCHAF1A [ NCBI-GEO ]   CHAF1A [ EBI - ARRAY_EXPRESS ]   CHAF1A [ SEEK ]   CHAF1A [ MEM ]
Gene Expression Viewer (FireBrowse)CHAF1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10036
GTEX Portal (Tissue expression)CHAF1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13111   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13111  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13111
Splice isoforms : SwissVarQ13111
PhosPhoSitePlusQ13111
Domains : Interpro (EBI)CAF1-p150_C2    CAF1_asu_N    CAF1A   
Domain families : Pfam (Sanger)CAF1-p150_C2 (PF15539)    CAF1-p150_N (PF15557)    CAF1A (PF12253)   
Domain families : Pfam (NCBI)pfam15539    pfam15557    pfam12253   
Conserved Domain (NCBI)CHAF1A
DMDM Disease mutations10036
Blocks (Seattle)CHAF1A
SuperfamilyQ13111
Human Protein AtlasENSG00000167670
Peptide AtlasQ13111
HPRD03148
IPIIPI00023177   IPI00219363   IPI00219364   IPI01018877   
Protein Interaction databases
DIP (DOE-UCLA)Q13111
IntAct (EBI)Q13111
FunCoupENSG00000167670
BioGRIDCHAF1A
STRING (EMBL)CHAF1A
ZODIACCHAF1A
Ontologies - Pathways
QuickGOQ13111
Ontology : AmiGOnuclear chromatin  chromatin binding  protein binding  DNA replication  DNA repair  DNA replication-dependent nucleosome assembly  protein complex assembly  cell cycle  chromatin assembly  CAF-1 complex  identical protein binding  protein complex  unfolded protein binding  chromo shadow domain binding  
Ontology : EGO-EBInuclear chromatin  chromatin binding  protein binding  DNA replication  DNA repair  DNA replication-dependent nucleosome assembly  protein complex assembly  cell cycle  chromatin assembly  CAF-1 complex  identical protein binding  protein complex  unfolded protein binding  chromo shadow domain binding  
Pathways : BIOCARTABTG family proteins and cell cycle regulation [Genes]    Control of Gene Expression by Vitamin D Receptor [Genes]   
NDEx NetworkCHAF1A
Atlas of Cancer Signalling NetworkCHAF1A
Wikipedia pathwaysCHAF1A
Orthology - Evolution
OrthoDB10036
GeneTree (enSembl)ENSG00000167670
Phylogenetic Trees/Animal Genes : TreeFamCHAF1A
HOVERGENQ13111
HOGENOMQ13111
Homologs : HomoloGeneCHAF1A
Homology/Alignments : Family Browser (UCSC)CHAF1A
Gene fusions - Rearrangements
Fusion : MitelmanCHAF1A/CCDC94 [19p13.3/19p13.3]  
Fusion : MitelmanKDM4B/CHAF1A [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion: TCGACHAF1A 19p13.3 CCDC94 19p13.3 BRCA
Fusion: TCGAKDM4B 19p13.3 CHAF1A 19p13.3 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHAF1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHAF1A
dbVarCHAF1A
ClinVarCHAF1A
1000_GenomesCHAF1A 
Exome Variant ServerCHAF1A
ExAC (Exome Aggregation Consortium)CHAF1A (select the gene name)
Genetic variants : HAPMAP10036
Genomic Variants (DGV)CHAF1A [DGVbeta]
DECIPHERCHAF1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHAF1A 
Mutations
ICGC Data PortalCHAF1A 
TCGA Data PortalCHAF1A 
Broad Tumor PortalCHAF1A
OASIS PortalCHAF1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHAF1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHAF1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHAF1A
DgiDB (Drug Gene Interaction Database)CHAF1A
DoCM (Curated mutations)CHAF1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHAF1A (select a term)
intoGenCHAF1A
Cancer3DCHAF1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601246   
Orphanet
MedgenCHAF1A
Genetic Testing Registry CHAF1A
NextProtQ13111 [Medical]
TSGene10036
GENETestsCHAF1A
Target ValidationCHAF1A
Huge Navigator CHAF1A [HugePedia]
snp3D : Map Gene to Disease10036
BioCentury BCIQCHAF1A
ClinGenCHAF1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10036
Chemical/Pharm GKB GenePA26446
Clinical trialCHAF1A
Miscellaneous
canSAR (ICR)CHAF1A (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHAF1A
EVEXCHAF1A
GoPubMedCHAF1A
iHOPCHAF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:02:12 CEST 2017

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