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CHAF1B (chromatin assembly factor 1 subunit B)

Identity

Alias_nameschromatin assembly factor 1
Alias_symbol (synonym)CAF1P60
CAF-1
CAF1
CAF1A
MPP7
MPHOSPH7
Other aliasCAF-IP60
HGNC (Hugo) CHAF1B
LocusID (NCBI) 8208
Atlas_Id 40068
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 36385391 and ends at 36416827 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHAF1B   1911
Cards
Entrez_Gene (NCBI)CHAF1B  8208  chromatin assembly factor 1 subunit B
AliasesCAF-1; CAF-IP60; CAF1; CAF1A; 
CAF1P60; MPHOSPH7; MPP7
GeneCards (Weizmann)CHAF1B
Ensembl hg19 (Hinxton)ENSG00000159259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159259 [Gene_View]  chr21:36385391-36416827 [Contig_View]  CHAF1B [Vega]
ICGC DataPortalENSG00000159259
TCGA cBioPortalCHAF1B
AceView (NCBI)CHAF1B
Genatlas (Paris)CHAF1B
WikiGenes8208
SOURCE (Princeton)CHAF1B
Genetics Home Reference (NIH)CHAF1B
Genomic and cartography
GoldenPath hg38 (UCSC)CHAF1B  -     chr21:36385391-36416827 +  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHAF1B  -     21q22.12   [Description]    (hg19-Feb_2009)
EnsemblCHAF1B - 21q22.12 [CytoView hg19]  CHAF1B - 21q22.12 [CytoView hg38]
Mapping of homologs : NCBICHAF1B [Mapview hg19]  CHAF1B [Mapview hg38]
OMIM601245   
Gene and transcription
Genbank (Entrez)AJ001856 AK092781 AK313152 AL711314 BC001143
RefSeq transcript (Entrez)NM_005441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHAF1B
Cluster EST : UnigeneHs.75238 [ NCBI ]
CGAP (NCI)Hs.75238
Alternative Splicing GalleryENSG00000159259
Gene ExpressionCHAF1B [ NCBI-GEO ]   CHAF1B [ EBI - ARRAY_EXPRESS ]   CHAF1B [ SEEK ]   CHAF1B [ MEM ]
Gene Expression Viewer (FireBrowse)CHAF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8208
GTEX Portal (Tissue expression)CHAF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13112   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13112  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13112
Splice isoforms : SwissVarQ13112
PhosPhoSitePlusQ13112
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CAF1_p60_C    Gprotein_B    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)CAF-1_p60_C (PF15512)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam15512    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)CHAF1B
DMDM Disease mutations8208
Blocks (Seattle)CHAF1B
SuperfamilyQ13112
Human Protein AtlasENSG00000159259
Peptide AtlasQ13112
HPRD03147
IPIIPI00011857   IPI01022881   
Protein Interaction databases
DIP (DOE-UCLA)Q13112
IntAct (EBI)Q13112
FunCoupENSG00000159259
BioGRIDCHAF1B
STRING (EMBL)CHAF1B
ZODIACCHAF1B
Ontologies - Pathways
QuickGOQ13112
Ontology : AmiGOnuclear chromatin  chromatin binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  DNA replication  DNA repair  DNA replication-dependent nucleosome assembly  transcription, DNA-templated  regulation of transcription, DNA-templated  protein complex assembly  cell cycle  chromatin assembly  CAF-1 complex  histone binding  histone binding  protein complex  unfolded protein binding  
Ontology : EGO-EBInuclear chromatin  chromatin binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  DNA replication  DNA repair  DNA replication-dependent nucleosome assembly  transcription, DNA-templated  regulation of transcription, DNA-templated  protein complex assembly  cell cycle  chromatin assembly  CAF-1 complex  histone binding  histone binding  protein complex  unfolded protein binding  
Pathways : BIOCARTABTG family proteins and cell cycle regulation [Genes]   
NDEx NetworkCHAF1B
Atlas of Cancer Signalling NetworkCHAF1B
Wikipedia pathwaysCHAF1B
Orthology - Evolution
OrthoDB8208
GeneTree (enSembl)ENSG00000159259
Phylogenetic Trees/Animal Genes : TreeFamCHAF1B
HOVERGENQ13112
HOGENOMQ13112
Homologs : HomoloGeneCHAF1B
Homology/Alignments : Family Browser (UCSC)CHAF1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHAF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHAF1B
dbVarCHAF1B
ClinVarCHAF1B
1000_GenomesCHAF1B 
Exome Variant ServerCHAF1B
ExAC (Exome Aggregation Consortium)CHAF1B (select the gene name)
Genetic variants : HAPMAP8208
Genomic Variants (DGV)CHAF1B [DGVbeta]
DECIPHERCHAF1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHAF1B 
Mutations
ICGC Data PortalCHAF1B 
TCGA Data PortalCHAF1B 
Broad Tumor PortalCHAF1B
OASIS PortalCHAF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHAF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHAF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHAF1B
DgiDB (Drug Gene Interaction Database)CHAF1B
DoCM (Curated mutations)CHAF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHAF1B (select a term)
intoGenCHAF1B
Cancer3DCHAF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601245   
Orphanet
MedgenCHAF1B
Genetic Testing Registry CHAF1B
NextProtQ13112 [Medical]
TSGene8208
GENETestsCHAF1B
Target ValidationCHAF1B
Huge Navigator CHAF1B [HugePedia]
snp3D : Map Gene to Disease8208
BioCentury BCIQCHAF1B
ClinGenCHAF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8208
Chemical/Pharm GKB GenePA26447
Clinical trialCHAF1B
Miscellaneous
canSAR (ICR)CHAF1B (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHAF1B
EVEXCHAF1B
GoPubMedCHAF1B
iHOPCHAF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:49:44 CEST 2017

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