Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CHAMP1 (chromosome alignment maintaining phosphoprotein 1)

Identity

Alias (NCBI)C13orf8
CAMP
CHAMP
MRD40
ZNF828
HGNC (Hugo) CHAMP1
HGNC Alias symbCAMP
CHAMP
HGNC Alias namechromosome alignment-maintaining phosphoprotein
HGNC Previous nameC13orf8
 ZNF828
HGNC Previous namechromosome 13 open reading frame 8
 zinc finger protein 828
LocusID (NCBI) 283489
Atlas_Id 61788
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 114314335 and ends at 114327328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHAMP1 (13q34) / ZSCAN18 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHAMP1   20311
Cards
Entrez_Gene (NCBI)CHAMP1    chromosome alignment maintaining phosphoprotein 1
AliasesC13orf8; CAMP; CHAMP; MRD40; 
ZNF828
GeneCards (Weizmann)CHAMP1
Ensembl hg19 (Hinxton)ENSG00000198824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198824 [Gene_View]  ENSG00000198824 [Sequence]  chr13:114314335-114327328 [Contig_View]  CHAMP1 [Vega]
ICGC DataPortalENSG00000198824
TCGA cBioPortalCHAMP1
AceView (NCBI)CHAMP1
Genatlas (Paris)CHAMP1
SOURCE (Princeton)CHAMP1
Genetics Home Reference (NIH)CHAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)CHAMP1  -     chr13:114314335-114327328 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHAMP1  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathCHAMP1 - 13q34 [CytoView hg19]  CHAMP1 - 13q34 [CytoView hg38]
ImmunoBaseENSG00000198824
genome Data Viewer NCBICHAMP1 [Mapview hg19]  
OMIM616327   616579   
Gene and transcription
Genbank (Entrez)AB058705 AK074894 AK096346 BC004820 BC019576
RefSeq transcript (Entrez)NM_001164144 NM_001164145 NM_032436
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHAMP1
Alternative Splicing GalleryENSG00000198824
Gene ExpressionCHAMP1 [ NCBI-GEO ]   CHAMP1 [ EBI - ARRAY_EXPRESS ]   CHAMP1 [ SEEK ]   CHAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHAMP1 [ Firebrowse - Broad ]
GenevisibleExpression of CHAMP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283489
GTEX Portal (Tissue expression)CHAMP1
Human Protein AtlasENSG00000198824-CHAMP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JM3
Splice isoforms : SwissVarQ96JM3
PhosPhoSitePlusQ96JM3
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)CAMP    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)CHAMP1
Blocks (Seattle)CHAMP1
PDB (RSDB)5XPT    5XPU    6EKJ    6EKL   
PDB Europe5XPT    5XPU    6EKJ    6EKL   
PDB (PDBSum)5XPT    5XPU    6EKJ    6EKL   
PDB (IMB)5XPT    5XPU    6EKJ    6EKL   
Structural Biology KnowledgeBase5XPT    5XPU    6EKJ    6EKL   
SCOP (Structural Classification of Proteins)5XPT    5XPU    6EKJ    6EKL   
CATH (Classification of proteins structures)5XPT    5XPU    6EKJ    6EKL   
SuperfamilyQ96JM3
Human Protein Atlas [tissue]ENSG00000198824-CHAMP1 [tissue]
Peptide AtlasQ96JM3
HPRD10707
IPIIPI00064212   
Protein Interaction databases
DIP (DOE-UCLA)Q96JM3
IntAct (EBI)Q96JM3
BioGRIDCHAMP1
STRING (EMBL)CHAMP1
ZODIACCHAMP1
Ontologies - Pathways
QuickGOQ96JM3
Ontology : AmiGOcondensed chromosome kinetochore  condensed chromosome kinetochore  condensed chromosome  nucleic acid binding  protein binding  cell  nucleus  nucleoplasm  nucleoplasm  cytoplasm  spindle  spindle  nuclear body  sister chromatid biorientation  sister chromatid biorientation  protein localization to kinetochore  protein localization to kinetochore  protein localization to microtubule  protein localization to microtubule  metal ion binding  attachment of mitotic spindle microtubules to kinetochore  attachment of mitotic spindle microtubules to kinetochore  Flemming body  
Ontology : EGO-EBIcondensed chromosome kinetochore  condensed chromosome kinetochore  condensed chromosome  nucleic acid binding  protein binding  cell  nucleus  nucleoplasm  nucleoplasm  cytoplasm  spindle  spindle  nuclear body  sister chromatid biorientation  sister chromatid biorientation  protein localization to kinetochore  protein localization to kinetochore  protein localization to microtubule  protein localization to microtubule  metal ion binding  attachment of mitotic spindle microtubules to kinetochore  attachment of mitotic spindle microtubules to kinetochore  Flemming body  
NDEx NetworkCHAMP1
Atlas of Cancer Signalling NetworkCHAMP1
Wikipedia pathwaysCHAMP1
Orthology - Evolution
OrthoDB283489
GeneTree (enSembl)ENSG00000198824
Phylogenetic Trees/Animal Genes : TreeFamCHAMP1
HOGENOMQ96JM3
Homologs : HomoloGeneCHAMP1
Homology/Alignments : Family Browser (UCSC)CHAMP1
Gene fusions - Rearrangements
Fusion : QuiverCHAMP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHAMP1 [hg38]
dbVarCHAMP1
ClinVarCHAMP1
MonarchCHAMP1
1000_GenomesCHAMP1 
Exome Variant ServerCHAMP1
GNOMAD BrowserENSG00000198824
Varsome BrowserCHAMP1
Genomic Variants (DGV)CHAMP1 [DGVbeta]
DECIPHERCHAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHAMP1 
Mutations
ICGC Data PortalCHAMP1 
TCGA Data PortalCHAMP1 
Broad Tumor PortalCHAMP1
OASIS PortalCHAMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHAMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHAMP1
Mutations and Diseases : HGMDCHAMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHAMP1
DgiDB (Drug Gene Interaction Database)CHAMP1
DoCM (Curated mutations)CHAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHAMP1 (select a term)
intoGenCHAMP1
Cancer3DCHAMP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616327    616579   
Orphanet18028   
DisGeNETCHAMP1
MedgenCHAMP1
Genetic Testing Registry CHAMP1
NextProtQ96JM3 [Medical]
GENETestsCHAMP1
Target ValidationCHAMP1
Huge Navigator CHAMP1 [HugePedia]
ClinGenCHAMP1
Clinical trials, drugs, therapy
MyCancerGenomeCHAMP1
Protein Interactions : CTD
Pharm GKB GenePA162410749
Clinical trialCHAMP1
Miscellaneous
canSAR (ICR)CHAMP1 (select the gene name)
HarmonizomeCHAMP1
DataMed IndexCHAMP1
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHAMP1
EVEXCHAMP1
GoPubMedCHAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 16:49:52 CET 2020
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