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CHAMP1 (chromosome alignment maintaining phosphoprotein 1)

Identity

Alias_namesC13orf8
ZNF828
chromosome 13 open reading frame 8
zinc finger protein 828
Alias_symbol (synonym)CAMP
CHAMP
Other aliasMRD40
HGNC (Hugo) CHAMP1
LocusID (NCBI) 283489
Atlas_Id 61788
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 114314335 and ends at 114327328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CHAMP1 (13q34) / ZSCAN18 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHAMP1   20311
Cards
Entrez_Gene (NCBI)CHAMP1  283489  chromosome alignment maintaining phosphoprotein 1
AliasesC13orf8; CAMP; CHAMP; MRD40; 
ZNF828
GeneCards (Weizmann)CHAMP1
Ensembl hg19 (Hinxton)ENSG00000198824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198824 [Gene_View]  chr13:114314335-114327328 [Contig_View]  CHAMP1 [Vega]
ICGC DataPortalENSG00000198824
TCGA cBioPortalCHAMP1
AceView (NCBI)CHAMP1
Genatlas (Paris)CHAMP1
WikiGenes283489
SOURCE (Princeton)CHAMP1
Genetics Home Reference (NIH)CHAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)CHAMP1  -     chr13:114314335-114327328 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHAMP1  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblCHAMP1 - 13q34 [CytoView hg19]  CHAMP1 - 13q34 [CytoView hg38]
Mapping of homologs : NCBICHAMP1 [Mapview hg19]  CHAMP1 [Mapview hg38]
OMIM616327   616579   
Gene and transcription
Genbank (Entrez)AB058705 AK074894 AK096346 BC004820 BC019576
RefSeq transcript (Entrez)NM_001164144 NM_001164145 NM_032436
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHAMP1
Cluster EST : UnigeneHs.7542 [ NCBI ]
CGAP (NCI)Hs.7542
Alternative Splicing GalleryENSG00000198824
Gene ExpressionCHAMP1 [ NCBI-GEO ]   CHAMP1 [ EBI - ARRAY_EXPRESS ]   CHAMP1 [ SEEK ]   CHAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283489
GTEX Portal (Tissue expression)CHAMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JM3
Splice isoforms : SwissVarQ96JM3
PhosPhoSitePlusQ96JM3
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)CHAMP1
DMDM Disease mutations283489
Blocks (Seattle)CHAMP1
SuperfamilyQ96JM3
Human Protein AtlasENSG00000198824
Peptide AtlasQ96JM3
HPRD10707
IPIIPI00064212   
Protein Interaction databases
DIP (DOE-UCLA)Q96JM3
IntAct (EBI)Q96JM3
FunCoupENSG00000198824
BioGRIDCHAMP1
STRING (EMBL)CHAMP1
ZODIACCHAMP1
Ontologies - Pathways
QuickGOQ96JM3
Ontology : AmiGOcondensed chromosome kinetochore  condensed chromosome  nucleic acid binding  protein binding  nucleus  nucleoplasm  cytoplasm  spindle  nuclear body  sister chromatid biorientation  protein localization to kinetochore  protein localization to microtubule  metal ion binding  attachment of mitotic spindle microtubules to kinetochore  
Ontology : EGO-EBIcondensed chromosome kinetochore  condensed chromosome  nucleic acid binding  protein binding  nucleus  nucleoplasm  cytoplasm  spindle  nuclear body  sister chromatid biorientation  protein localization to kinetochore  protein localization to microtubule  metal ion binding  attachment of mitotic spindle microtubules to kinetochore  
NDEx NetworkCHAMP1
Atlas of Cancer Signalling NetworkCHAMP1
Wikipedia pathwaysCHAMP1
Orthology - Evolution
OrthoDB283489
GeneTree (enSembl)ENSG00000198824
Phylogenetic Trees/Animal Genes : TreeFamCHAMP1
HOVERGENQ96JM3
HOGENOMQ96JM3
Homologs : HomoloGeneCHAMP1
Homology/Alignments : Family Browser (UCSC)CHAMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHAMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHAMP1
dbVarCHAMP1
ClinVarCHAMP1
1000_GenomesCHAMP1 
Exome Variant ServerCHAMP1
ExAC (Exome Aggregation Consortium)CHAMP1 (select the gene name)
Genetic variants : HAPMAP283489
Genomic Variants (DGV)CHAMP1 [DGVbeta]
DECIPHERCHAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHAMP1 
Mutations
ICGC Data PortalCHAMP1 
TCGA Data PortalCHAMP1 
Broad Tumor PortalCHAMP1
OASIS PortalCHAMP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCHAMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHAMP1
DgiDB (Drug Gene Interaction Database)CHAMP1
DoCM (Curated mutations)CHAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHAMP1 (select a term)
intoGenCHAMP1
Cancer3DCHAMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616327    616579   
Orphanet18028   
MedgenCHAMP1
Genetic Testing Registry CHAMP1
NextProtQ96JM3 [Medical]
TSGene283489
GENETestsCHAMP1
Target ValidationCHAMP1
Huge Navigator CHAMP1 [HugePedia]
snp3D : Map Gene to Disease283489
BioCentury BCIQCHAMP1
ClinGenCHAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283489
Chemical/Pharm GKB GenePA162410749
Clinical trialCHAMP1
Miscellaneous
canSAR (ICR)CHAMP1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHAMP1
EVEXCHAMP1
GoPubMedCHAMP1
iHOPCHAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:33 CEST 2017
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