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CHD1L (chromodomain helicase DNA binding protein 1-like)

Identity

Other namesALC1
CHDL
HGNC (Hugo) CHD1L
LocusID (NCBI) 9557
Location 1q21.1
Location_base_pair Starts at 146714291 and ends at 146767447 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHD1L   1916
Cards
Entrez_Gene (NCBI)CHD1L  9557  chromodomain helicase DNA binding protein 1-like
GeneCards (Weizmann)CHD1L
Ensembl hg19 (Hinxton)ENSG00000131778 [Gene_View]  chr1:146714291-146767447 [Contig_View]  CHD1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000131778 [Gene_View]  chr1:146714291-146767447 [Contig_View]  CHD1L [Vega]
ICGC DataPortalENSG00000131778
cBioPortalCHD1L
AceView (NCBI)CHD1L
Genatlas (Paris)CHD1L
WikiGenes9557
SOURCE (Princeton)CHD1L
Genomic and cartography
GoldenPath hg19 (UCSC)CHD1L  -     chr1:146714291-146767447 +  1q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHD1L  -     1q21.1   [Description]    (hg38-Dec_2013)
EnsemblCHD1L - 1q21.1 [CytoView hg19]  CHD1L - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBICHD1L [Mapview hg19]  CHD1L [Mapview hg38]
OMIM613039   
Gene and transcription
Genbank (Entrez)AF054177 AF537213 AK001342 AK026183 AK027631
RefSeq transcript (Entrez)NM_001256336 NM_001256337 NM_001256338 NM_004284 NM_024568
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838511 NW_004929293
Consensus coding sequences : CCDS (NCBI)CHD1L
Cluster EST : UnigeneHs.191164 [ NCBI ]
CGAP (NCI)Hs.191164
Alternative Splicing : Fast-db (Paris)GSHG0000908
Alternative Splicing GalleryENSG00000131778
Gene ExpressionCHD1L [ NCBI-GEO ]     CHD1L [ SEEK ]   CHD1L [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WJ1 (Uniprot)
NextProtQ86WJ1  [Medical]
With graphics : InterProQ86WJ1
Splice isoforms : SwissVarQ86WJ1 (Swissvar)
Catalytic activity : Enzyme3.6.4.12 [ Enzyme-Expasy ]   3.6.4.123.6.4.12 [ IntEnz-EBI ]   3.6.4.12 [ BRENDA ]   3.6.4.12 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)DEAH_ATP_HELICASE (PS00690)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    MACRO (PS51154)   
Domains : Interpro (EBI)DNA/RNA_helicase_DEAH_CS    Helicase_ATP-bd    Helicase_C    Macro_dom    P-loop_NTPase    SNF2_N   
Related proteins : CluSTrQ86WJ1
Domain families : Pfam (Sanger)Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam00271    pfam00176   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
DMDM Disease mutations9557
Blocks (Seattle)Q86WJ1
Human Protein AtlasENSG00000131778
Peptide AtlasQ86WJ1
HPRD09880
IPIIPI00329088   IPI00890729   IPI00854584   IPI00890749   IPI00909123   IPI00400835   IPI00003589   
Protein Interaction databases
DIP (DOE-UCLA)Q86WJ1
IntAct (EBI)Q86WJ1
FunCoupENSG00000131778
BioGRIDCHD1L
IntegromeDBCHD1L
STRING (EMBL)CHD1L
Ontologies - Pathways
QuickGOQ86WJ1
Ontology : AmiGOnucleotide binding  DNA binding  ATP-dependent DNA helicase activity  protein binding  ATP binding  nucleus  nucleolus  cytoplasm  plasma membrane  ATP catabolic process  ATP catabolic process  DNA repair  chromatin remodeling  cellular response to DNA damage stimulus  ATPase activity  DNA duplex unwinding  
Ontology : EGO-EBInucleotide binding  DNA binding  ATP-dependent DNA helicase activity  protein binding  ATP binding  nucleus  nucleolus  cytoplasm  plasma membrane  ATP catabolic process  ATP catabolic process  DNA repair  chromatin remodeling  cellular response to DNA damage stimulus  ATPase activity  DNA duplex unwinding  
Protein Interaction DatabaseCHD1L
DoCM (Curated mutations)CHD1L
Wikipedia pathwaysCHD1L
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCHD1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHD1L
dbVarCHD1L
ClinVarCHD1L
1000_GenomesCHD1L 
Exome Variant ServerCHD1L
SNP (GeneSNP Utah)CHD1L
SNP : HGBaseCHD1L
Genetic variants : HAPMAPCHD1L
Genomic VariantsCHD1L  CHD1L [DGVbeta]
Mutations
ICGC Data PortalENSG00000131778 
Somatic Mutations in Cancer : COSMICCHD1L 
CONAN: Copy Number AnalysisCHD1L 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:146714291-146767447
Mutations and Diseases : HGMDCHD1L
OMIM613039   
MedgenCHD1L
NextProtQ86WJ1 [Medical]
GENETestsCHD1L
Disease Genetic AssociationCHD1L
Huge Navigator CHD1L [HugePedia]  CHD1L [HugeCancerGEM]
snp3D : Map Gene to Disease9557
DGIdb (Drug Gene Interaction db)CHD1L
General knowledge
Homologs : HomoloGeneCHD1L
Homology/Alignments : Family Browser (UCSC)CHD1L
Phylogenetic Trees/Animal Genes : TreeFamCHD1L
Chemical/Protein Interactions : CTD9557
Chemical/Pharm GKB GenePA26452
Clinical trialCHD1L
Cancer Resource (Charite)ENSG00000131778
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
CoreMineCHD1L
GoPubMedCHD1L
iHOPCHD1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:49:43 CET 2014

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