Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHD1L (chromodomain helicase DNA binding protein 1-like)

Identity

Other namesALC1
CHDL
HGNC (Hugo) CHD1L
LocusID (NCBI) 9557
Location 1q21.1
Location_base_pair Starts at 146714291 and ends at 146767447 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHD1L   1916
Cards
Entrez_Gene (NCBI)CHD1L  9557  chromodomain helicase DNA binding protein 1-like
GeneCards (Weizmann)CHD1L
Ensembl (Hinxton)ENSG00000131778 [Gene_View]  chr1:146714291-146767447 [Contig_View]  CHD1L [Vega]
ICGC DataPortalENSG00000131778
cBioPortalCHD1L
AceView (NCBI)CHD1L
Genatlas (Paris)CHD1L
WikiGenes9557
SOURCE (Princeton)NM_001256336 NM_001256337 NM_001256338 NM_004284 NM_024568
Genomic and cartography
GoldenPath (UCSC)CHD1L  -  1q21.1   chr1:146714291-146767447 +  1q21.1   [Description]    (hg19-Feb_2009)
EnsemblCHD1L - 1q21.1 [CytoView]
Mapping of homologs : NCBICHD1L [Mapview]
OMIM613039   
Gene and transcription
Genbank (Entrez)AF054177 AF537213 AK001342 AK026183 AK027631
RefSeq transcript (Entrez)NM_001256336 NM_001256337 NM_001256338 NM_004284 NM_024568
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838511 NW_004929293
Consensus coding sequences : CCDS (NCBI)CHD1L
Cluster EST : UnigeneHs.191164 [ NCBI ]
CGAP (NCI)Hs.191164
Alternative Splicing : Fast-db (Paris)GSHG0000908
Alternative Splicing GalleryENSG00000131778
Gene ExpressionCHD1L [ NCBI-GEO ]     CHD1L [ SEEK ]   CHD1L [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WJ1 (Uniprot)
NextProtQ86WJ1  [Medical]
With graphics : InterProQ86WJ1
Splice isoforms : SwissVarQ86WJ1 (Swissvar)
Catalytic activity : Enzyme3.6.4.12 [ Enzyme-Expasy ]   3.6.4.123.6.4.12 [ IntEnz-EBI ]   3.6.4.12 [ BRENDA ]   3.6.4.12 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)DEAH_ATP_HELICASE (PS00690)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    MACRO (PS51154)   
Domains : Interpro (EBI)DNA/RNA_helicase_DEAH_CS [organisation]   Helicase_ATP-bd [organisation]   Helicase_C [organisation]   Macro_dom [organisation]   P-loop_NTPase [organisation]   SNF2_N [organisation]  
Related proteins : CluSTrQ86WJ1
Domain families : Pfam (Sanger)Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam00271    pfam00176   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
DMDM Disease mutations9557
Blocks (Seattle)Q86WJ1
Human Protein AtlasENSG00000131778 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ86WJ1
HPRD09880
IPIIPI00329088   IPI00890729   IPI00854584   IPI00890749   IPI00909123   IPI00400835   IPI00003589   
Protein Interaction databases
DIP (DOE-UCLA)Q86WJ1
IntAct (EBI)Q86WJ1
FunCoupENSG00000131778
BioGRIDCHD1L
InParanoidQ86WJ1
Interologous Interaction database Q86WJ1
IntegromeDBCHD1L
STRING (EMBL)CHD1L
Ontologies - Pathways
Ontology : AmiGOnucleotide binding  DNA binding  ATP-dependent DNA helicase activity  protein binding  ATP binding  nucleus  nucleolus  cytoplasm  plasma membrane  ATP catabolic process  ATP catabolic process  DNA repair  chromatin remodeling  cellular response to DNA damage stimulus  ATPase activity  DNA duplex unwinding  
Ontology : EGO-EBInucleotide binding  DNA binding  ATP-dependent DNA helicase activity  protein binding  ATP binding  nucleus  nucleolus  cytoplasm  plasma membrane  ATP catabolic process  ATP catabolic process  DNA repair  chromatin remodeling  cellular response to DNA damage stimulus  ATPase activity  DNA duplex unwinding  
Protein Interaction DatabaseCHD1L
Wikipedia pathwaysCHD1L
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHD1L
snp3D : Map Gene to Disease9557
SNP (GeneSNP Utah)CHD1L
SNP : HGBaseCHD1L
Genetic variants : HAPMAPCHD1L
Exome VariantCHD1L
1000_GenomesCHD1L 
ICGC programENSG00000131778 
Somatic Mutations in Cancer : COSMICCHD1L 
CONAN: Copy Number AnalysisCHD1L 
Mutations and Diseases : HGMDCHD1L
Genomic VariantsCHD1L  CHD1L [DGVbeta]
dbVarCHD1L
ClinVarCHD1L
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM613039   
MedgenCHD1L
GENETestsCHD1L
Disease Genetic AssociationCHD1L
Huge Navigator CHD1L [HugePedia]  CHD1L [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCHD1L
Homology/Alignments : Family Browser (UCSC)CHD1L
Phylogenetic Trees/Animal Genes : TreeFamCHD1L
Chemical/Protein Interactions : CTD9557
Chemical/Pharm GKB GenePA26452
Clinical trialCHD1L
Cancer Resource (Charite)ENSG00000131778
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
CoreMineCHD1L
iHOPCHD1L
OncoSearchCHD1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:48:08 CEST 2014

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