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CHD7 (chromodomain helicase DNA binding protein 7)

Identity

Alias (NCBI)CRG
HH5
IS3
KAL5
HGNC (Hugo) CHD7
HGNC Alias symbKIAA1416
FLJ20357
FLJ20361
HGNC Previous nameCRG
HGNC Previous nameCHARGE association
LocusID (NCBI) 55636
Atlas_Id 52981
Location 8q12.2  [Link to chromosome band 8q12]
Location_base_pair Starts at 60678740 and ends at 60868027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD7 (8q12.2) / ASPH (8q12.3)CHD7 (8q12.2) / CCDC58 (3q21.1)CHD7 (8q12.2) / TACC1 (8p11.22)
CHD7 (8q12.2) / TOX (8q12.1)CHD7 (8q12.2) / WHSC1L1 (8p11.23)FAM222B (17q11.2) / CHD7 (8q12.2)
FOXO3 (6q21) / CHD7 (8q12.2)PVT1 (8q24.21) / CHD7 (8q12.2)RAB2A (8q12.1) / CHD7 (8q12.2)
TOX (8q12.1) / CHD7 (8q12.2)C17orf63 CHD7 8q12.1CHD7 8q12.1 / ASPH 8q12.3
CHD7 8q12.1 / CCDC58 3q21.1CHD7 8q12.1 / TACC1 8p11.22CHD7 8q12.1 / TOX 8q12.1
CHD7 8q12.1 / WHSC1L1 8p11.23FOXO3 6q21 / CHD7 8q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CHD7   20626
LRG (Locus Reference Genomic)LRG_176
Cards
Entrez_Gene (NCBI)CHD7    chromodomain helicase DNA binding protein 7
AliasesCRG; HH5; IS3; KAL5
GeneCards (Weizmann)CHD7
Ensembl hg19 (Hinxton)ENSG00000171316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171316 [Gene_View]  ENSG00000171316 [Sequence]  chr8:60678740-60868027 [Contig_View]  CHD7 [Vega]
ICGC DataPortalENSG00000171316
TCGA cBioPortalCHD7
AceView (NCBI)CHD7
Genatlas (Paris)CHD7
SOURCE (Princeton)CHD7
Genetics Home Reference (NIH)CHD7
Genomic and cartography
GoldenPath hg38 (UCSC)CHD7  -     chr8:60678740-60868027 +  8q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHD7  -     8q12.2   [Description]    (hg19-Feb_2009)
GoldenPathCHD7 - 8q12.2 [CytoView hg19]  CHD7 - 8q12.2 [CytoView hg38]
ImmunoBaseENSG00000171316
Genome Data Viewer NCBICHD7 [Mapview hg19]  
OMIM214800   608892   612370   
Gene and transcription
Genbank (Entrez)AB037837 AK000364 AK000368 AK123158 AK225354
RefSeq transcript (Entrez)NM_001316690 NM_017780
Consensus coding sequences : CCDS (NCBI)CHD7
Gene ExpressionCHD7 [ NCBI-GEO ]   CHD7 [ EBI - ARRAY_EXPRESS ]   CHD7 [ SEEK ]   CHD7 [ MEM ]
Gene Expression Viewer (FireBrowse)CHD7 [ Firebrowse - Broad ]
GenevisibleExpression of CHD7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55636
GTEX Portal (Tissue expression)CHD7
Human Protein AtlasENSG00000171316-CHD7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CHD7
Human Protein Atlas [tissue]ENSG00000171316-CHD7 [tissue]
HPRD10595
Protein Interaction databases
BioGRIDCHD7
STRING (EMBL)CHD7
ZODIACCHD7
Ontologies - Pathways
Litterature
PubMed153 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCHD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:03:49 CEST 2021

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