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CHD9 (chromodomain helicase DNA binding protein 9)

Identity

Alias (NCBI)AD013
CHD-9
CReMM
KISH2
PRIC320
HGNC (Hugo) CHD9
HGNC Alias symbFLJ12178
KIAA0308
BC022889
LocusID (NCBI) 80205
Atlas_Id 61793
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 53054991 and ends at 53329150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD9 (16q12.2) / DLC1 (8p22)CHD9 (16q12.2) / KSR1 (17q11.1)CHD9 (16q12.2) / RAD51B (14q24.1)
CHD9 (16q12.2) / SPG7 (16q24.3)ZNF821 (16q22.2) / CHD9 (16q12.2)CHD9 KSR1
CHD9 SPG7CHD9 DLC1CHD9 RAD51B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CHD9   25701
Cards
Entrez_Gene (NCBI)CHD9    chromodomain helicase DNA binding protein 9
AliasesAD013; CHD-9; CReMM; KISH2; 
PRIC320
GeneCards (Weizmann)CHD9
Ensembl hg19 (Hinxton)ENSG00000177200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177200 [Gene_View]  ENSG00000177200 [Sequence]  chr16:53054991-53329150 [Contig_View]  CHD9 [Vega]
ICGC DataPortalENSG00000177200
TCGA cBioPortalCHD9
AceView (NCBI)CHD9
Genatlas (Paris)CHD9
SOURCE (Princeton)CHD9
Genetics Home Reference (NIH)CHD9
Genomic and cartography
GoldenPath hg38 (UCSC)CHD9  -     chr16:53054991-53329150 +  16q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHD9  -     16q12.2   [Description]    (hg19-Feb_2009)
GoldenPathCHD9 - 16q12.2 [CytoView hg19]  CHD9 - 16q12.2 [CytoView hg38]
ImmunoBaseENSG00000177200
Genome Data Viewer NCBICHD9 [Mapview hg19]  
OMIM616936   
Gene and transcription
Genbank (Entrez)AB002306 AF150735 AK022240 AK022582 AK092208
RefSeq transcript (Entrez)NM_001308319 NM_001352127 NM_001352156 NM_001352157 NM_001352158 NM_001382353 NM_001382354 NM_001382355 NM_015287 NM_025134
Consensus coding sequences : CCDS (NCBI)CHD9
Gene ExpressionCHD9 [ NCBI-GEO ]   CHD9 [ EBI - ARRAY_EXPRESS ]   CHD9 [ SEEK ]   CHD9 [ MEM ]
Gene Expression Viewer (FireBrowse)CHD9 [ Firebrowse - Broad ]
GenevisibleExpression of CHD9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80205
GTEX Portal (Tissue expression)CHD9
Human Protein AtlasENSG00000177200-CHD9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3L8U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3L8U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3L8U1
Catalytic activity : Enzyme3.6.4.12 [ Enzyme-Expasy ]   3.6.4.123.6.4.12 [ IntEnz-EBI ]   3.6.4.12 [ BRENDA ]   3.6.4.12 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ3L8U1
Domaine pattern : Prosite (Expaxy)CHROMO_2 (PS50013)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)BRK_domain    BRK_sf    CHD9    Chromo-like_dom_sf    Chromo/chromo_shadow_dom    Chromo_domain    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    SNF2-like_sf    SNF2_N   
Domain families : Pfam (Sanger)BRK (PF07533)    Chromo (PF00385)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam07533    pfam00385    pfam00271    pfam00176   
Domain families : Smart (EMBL)BRK (SM00592)  CHROMO (SM00298)  DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)CHD9
SuperfamilyQ3L8U1
AlphaFold pdb e-kbQ3L8U1   
Human Protein Atlas [tissue]ENSG00000177200-CHD9 [tissue]
HPRD08570
Protein Interaction databases
DIP (DOE-UCLA)Q3L8U1
IntAct (EBI)Q3L8U1
BioGRIDCHD9
STRING (EMBL)CHD9
ZODIACCHD9
Ontologies - Pathways
QuickGOQ3L8U1
Ontology : AmiGODNA binding  DNA helicase activity  ATP binding  nucleoplasm  nucleoplasm  cytosol  chromatin organization  hydrolase activity  regulation of lipid metabolic process  DNA duplex unwinding  nucleosome-dependent ATPase activity  
Ontology : EGO-EBIDNA binding  DNA helicase activity  ATP binding  nucleoplasm  nucleoplasm  cytosol  chromatin organization  hydrolase activity  regulation of lipid metabolic process  DNA duplex unwinding  nucleosome-dependent ATPase activity  
NDEx NetworkCHD9
Atlas of Cancer Signalling NetworkCHD9
Wikipedia pathwaysCHD9
Orthology - Evolution
OrthoDB80205
GeneTree (enSembl)ENSG00000177200
Phylogenetic Trees/Animal Genes : TreeFamCHD9
Homologs : HomoloGeneCHD9
Homology/Alignments : Family Browser (UCSC)CHD9
Gene fusions - Rearrangements
Fusion : QuiverCHD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHD9
dbVarCHD9
ClinVarCHD9
MonarchCHD9
1000_GenomesCHD9 
Exome Variant ServerCHD9
GNOMAD BrowserENSG00000177200
Varsome BrowserCHD9
ACMGCHD9 variants
VarityQ3L8U1
Genomic Variants (DGV)CHD9 [DGVbeta]
DECIPHERCHD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHD9 
Mutations
ICGC Data PortalCHD9 
TCGA Data PortalCHD9 
Broad Tumor PortalCHD9
OASIS PortalCHD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHD9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHD9
Mutations and Diseases : HGMDCHD9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCHD9
DgiDB (Drug Gene Interaction Database)CHD9
DoCM (Curated mutations)CHD9
CIViC (Clinical Interpretations of Variants in Cancer)CHD9
Cancer3DCHD9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616936   
Orphanet
DisGeNETCHD9
MedgenCHD9
Genetic Testing Registry CHD9
NextProtQ3L8U1 [Medical]
GENETestsCHD9
Target ValidationCHD9
Huge Navigator CHD9 [HugePedia]
ClinGenCHD9
Clinical trials, drugs, therapy
MyCancerGenomeCHD9
Protein Interactions : CTDCHD9
Pharm GKB GenePA128394727
PharosQ3L8U1
Clinical trialCHD9
Miscellaneous
canSAR (ICR)CHD9
HarmonizomeCHD9
DataMed IndexCHD9
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCHD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:46:02 CEST 2021

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