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CHD9 (chromodomain helicase DNA binding protein 9)

Identity

Alias_symbol (synonym)FLJ12178
KIAA0308
BC022889
Other aliasAD013
CHD-9
CReMM
KISH2
PRIC320
HGNC (Hugo) CHD9
LocusID (NCBI) 80205
Atlas_Id 61793
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 53155926 and ends at 53327502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHD9 (16q12.2) / DLC1 (8p22)CHD9 (16q12.2) / KSR1 (17q11.1)CHD9 (16q12.2) / RAD51B (14q24.1)
CHD9 (16q12.2) / SPG7 (16q24.3)ZNF821 (16q22.2) / CHD9 (16q12.2)CHD9 KSR1
CHD9 SPG7CHD9 DLC1CHD9 RAD51B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHD9   25701
Cards
Entrez_Gene (NCBI)CHD9  80205  chromodomain helicase DNA binding protein 9
AliasesAD013; CHD-9; CReMM; KISH2; 
PRIC320
GeneCards (Weizmann)CHD9
Ensembl hg19 (Hinxton)ENSG00000177200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177200 [Gene_View]  chr16:53155926-53327502 [Contig_View]  CHD9 [Vega]
ICGC DataPortalENSG00000177200
TCGA cBioPortalCHD9
AceView (NCBI)CHD9
Genatlas (Paris)CHD9
WikiGenes80205
SOURCE (Princeton)CHD9
Genetics Home Reference (NIH)CHD9
Genomic and cartography
GoldenPath hg38 (UCSC)CHD9  -     chr16:53155926-53327502 +  16q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHD9  -     16q12.2   [Description]    (hg19-Feb_2009)
EnsemblCHD9 - 16q12.2 [CytoView hg19]  CHD9 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBICHD9 [Mapview hg19]  CHD9 [Mapview hg38]
OMIM616936   
Gene and transcription
Genbank (Entrez)AB002306 AF150735 AK022240 AK022582 AK092208
RefSeq transcript (Entrez)NM_001308319 NM_015287 NM_025134
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHD9
Cluster EST : UnigeneHs.622347 [ NCBI ]
CGAP (NCI)Hs.622347
Alternative Splicing GalleryENSG00000177200
Gene ExpressionCHD9 [ NCBI-GEO ]   CHD9 [ EBI - ARRAY_EXPRESS ]   CHD9 [ SEEK ]   CHD9 [ MEM ]
Gene Expression Viewer (FireBrowse)CHD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80205
GTEX Portal (Tissue expression)CHD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3L8U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3L8U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3L8U1
Splice isoforms : SwissVarQ3L8U1
Catalytic activity : Enzyme3.6.4.12 [ Enzyme-Expasy ]   3.6.4.123.6.4.12 [ IntEnz-EBI ]   3.6.4.12 [ BRENDA ]   3.6.4.12 [ KEGG ]   
PhosPhoSitePlusQ3L8U1
Domaine pattern : Prosite (Expaxy)CHROMO_2 (PS50013)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)BRK_domain    Chromo/chromo_shadow_dom    Chromo_domain    Chromodomain-like    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    SNF2_N   
Domain families : Pfam (Sanger)BRK (PF07533)    Chromo (PF00385)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam07533    pfam00385    pfam00271    pfam00176   
Domain families : Smart (EMBL)BRK (SM00592)  CHROMO (SM00298)  DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)CHD9
DMDM Disease mutations80205
Blocks (Seattle)CHD9
SuperfamilyQ3L8U1
Human Protein AtlasENSG00000177200
Peptide AtlasQ3L8U1
HPRD08570
IPIIPI00383105   IPI00746795   IPI00643741   IPI00914955   IPI00941213   
Protein Interaction databases
DIP (DOE-UCLA)Q3L8U1
IntAct (EBI)Q3L8U1
FunCoupENSG00000177200
BioGRIDCHD9
STRING (EMBL)CHD9
ZODIACCHD9
Ontologies - Pathways
QuickGOQ3L8U1
Ontology : AmiGODNA binding  helicase activity  ATP binding  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  covalent chromatin modification  cellular lipid metabolic process  
Ontology : EGO-EBIDNA binding  helicase activity  ATP binding  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  covalent chromatin modification  cellular lipid metabolic process  
NDEx NetworkCHD9
Atlas of Cancer Signalling NetworkCHD9
Wikipedia pathwaysCHD9
Orthology - Evolution
OrthoDB80205
GeneTree (enSembl)ENSG00000177200
Phylogenetic Trees/Animal Genes : TreeFamCHD9
HOVERGENQ3L8U1
HOGENOMQ3L8U1
Homologs : HomoloGeneCHD9
Homology/Alignments : Family Browser (UCSC)CHD9
Gene fusions - Rearrangements
Fusion: TCGACHD9 KSR1
Fusion: TCGACHD9 SPG7
Fusion: TCGACHD9 DLC1
Fusion: TCGACHD9 RAD51B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHD9
dbVarCHD9
ClinVarCHD9
1000_GenomesCHD9 
Exome Variant ServerCHD9
ExAC (Exome Aggregation Consortium)CHD9 (select the gene name)
Genetic variants : HAPMAP80205
Genomic Variants (DGV)CHD9 [DGVbeta]
DECIPHERCHD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHD9 
Mutations
ICGC Data PortalCHD9 
TCGA Data PortalCHD9 
Broad Tumor PortalCHD9
OASIS PortalCHD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHD9
DgiDB (Drug Gene Interaction Database)CHD9
DoCM (Curated mutations)CHD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHD9 (select a term)
intoGenCHD9
Cancer3DCHD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616936   
Orphanet
MedgenCHD9
Genetic Testing Registry CHD9
NextProtQ3L8U1 [Medical]
TSGene80205
GENETestsCHD9
Target ValidationCHD9
Huge Navigator CHD9 [HugePedia]
snp3D : Map Gene to Disease80205
BioCentury BCIQCHD9
ClinGenCHD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80205
Chemical/Pharm GKB GenePA128394727
Clinical trialCHD9
Miscellaneous
canSAR (ICR)CHD9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHD9
EVEXCHD9
GoPubMedCHD9
iHOPCHD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:34 CEST 2017

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