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CHDH (choline dehydrogenase)

Identity

Other alias-
HGNC (Hugo) CHDH
LocusID (NCBI) 55349
Atlas_Id 50023
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 53816297 and ends at 53846393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARPC2 (2q35) / CHDH (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHDH   24288
Cards
Entrez_Gene (NCBI)CHDH  55349  choline dehydrogenase
Aliases
GeneCards (Weizmann)CHDH
Ensembl hg19 (Hinxton)ENSG00000016391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000016391 [Gene_View]  chr3:53816297-53846393 [Contig_View]  CHDH [Vega]
ICGC DataPortalENSG00000016391
TCGA cBioPortalCHDH
AceView (NCBI)CHDH
Genatlas (Paris)CHDH
WikiGenes55349
SOURCE (Princeton)CHDH
Genetics Home Reference (NIH)CHDH
Genomic and cartography
GoldenPath hg38 (UCSC)CHDH  -     chr3:53816297-53846393 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHDH  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblCHDH - 3p21.1 [CytoView hg19]  CHDH - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBICHDH [Mapview hg19]  CHDH [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ272267 AK055402 AK297575 BC034502 BE856786
RefSeq transcript (Entrez)NM_018397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHDH
Cluster EST : UnigeneHs.729536 [ NCBI ]
CGAP (NCI)Hs.729536
Alternative Splicing GalleryENSG00000016391
Gene ExpressionCHDH [ NCBI-GEO ]   CHDH [ EBI - ARRAY_EXPRESS ]   CHDH [ SEEK ]   CHDH [ MEM ]
Gene Expression Viewer (FireBrowse)CHDH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55349
GTEX Portal (Tissue expression)CHDH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE62
Splice isoforms : SwissVarQ8NE62
Catalytic activity : Enzyme1.1.99.1 [ Enzyme-Expasy ]   1.1.99.11.1.99.1 [ IntEnz-EBI ]   1.1.99.1 [ BRENDA ]   1.1.99.1 [ KEGG ]   
PhosPhoSitePlusQ8NE62
Domaine pattern : Prosite (Expaxy)GMC_OXRED_1 (PS00623)    GMC_OXRED_2 (PS00624)   
Domains : Interpro (EBI)FAD/NAD-binding_dom    GMC_OxRdtase    GMC_OxRdtase_N    GMC_OxRtase_C   
Domain families : Pfam (Sanger)GMC_oxred_C (PF05199)    GMC_oxred_N (PF00732)   
Domain families : Pfam (NCBI)pfam05199    pfam00732   
Conserved Domain (NCBI)CHDH
DMDM Disease mutations55349
Blocks (Seattle)CHDH
SuperfamilyQ8NE62
Human Protein AtlasENSG00000016391
Peptide AtlasQ8NE62
HPRD13050
IPIIPI00168603   IPI00797772   IPI00796003   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE62
IntAct (EBI)Q8NE62
FunCoupENSG00000016391
BioGRIDCHDH
STRING (EMBL)CHDH
ZODIACCHDH
Ontologies - Pathways
QuickGOQ8NE62
Ontology : AmiGOprotein binding  mitochondrial inner membrane  choline dehydrogenase activity  glycine betaine biosynthetic process from choline  choline catabolic process  flavin adenine dinucleotide binding  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  mitochondrial inner membrane  choline dehydrogenase activity  glycine betaine biosynthetic process from choline  choline catabolic process  flavin adenine dinucleotide binding  oxidation-reduction process  
Pathways : KEGGGlycine, serine and threonine metabolism   
NDEx NetworkCHDH
Atlas of Cancer Signalling NetworkCHDH
Wikipedia pathwaysCHDH
Orthology - Evolution
OrthoDB55349
GeneTree (enSembl)ENSG00000016391
Phylogenetic Trees/Animal Genes : TreeFamCHDH
HOVERGENQ8NE62
HOGENOMQ8NE62
Homologs : HomoloGeneCHDH
Homology/Alignments : Family Browser (UCSC)CHDH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHDH
dbVarCHDH
ClinVarCHDH
1000_GenomesCHDH 
Exome Variant ServerCHDH
ExAC (Exome Aggregation Consortium)CHDH (select the gene name)
Genetic variants : HAPMAP55349
Genomic Variants (DGV)CHDH [DGVbeta]
DECIPHERCHDH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHDH 
Mutations
ICGC Data PortalCHDH 
TCGA Data PortalCHDH 
Broad Tumor PortalCHDH
OASIS PortalCHDH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHDH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHDH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CHDH
DgiDB (Drug Gene Interaction Database)CHDH
DoCM (Curated mutations)CHDH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHDH (select a term)
intoGenCHDH
Cancer3DCHDH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCHDH
Genetic Testing Registry CHDH
NextProtQ8NE62 [Medical]
TSGene55349
GENETestsCHDH
Target ValidationCHDH
Huge Navigator CHDH [HugePedia]
snp3D : Map Gene to Disease55349
BioCentury BCIQCHDH
ClinGenCHDH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55349
Chemical/Pharm GKB GenePA134873121
Clinical trialCHDH
Miscellaneous
canSAR (ICR)CHDH (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHDH
EVEXCHDH
GoPubMedCHDH
iHOPCHDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:15 CEST 2017

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