Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHERP (calcium homeostasis endoplasmic reticulum protein)

Identity

Alias_symbol (synonym)ERPROT213-21
DAN16
Other aliasSCAF6
SRA1
HGNC (Hugo) CHERP
LocusID (NCBI) 10523
Atlas_Id 56584
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16517889 and ends at 16542452 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHERP (19p13.11) / CPAMD8 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHERP   16930
Cards
Entrez_Gene (NCBI)CHERP  10523  calcium homeostasis endoplasmic reticulum protein
AliasesDAN16; SCAF6; SRA1
GeneCards (Weizmann)CHERP
Ensembl hg19 (Hinxton)ENSG00000085872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085872 [Gene_View]  chr19:16517889-16542452 [Contig_View]  CHERP [Vega]
ICGC DataPortalENSG00000085872
TCGA cBioPortalCHERP
AceView (NCBI)CHERP
Genatlas (Paris)CHERP
WikiGenes10523
SOURCE (Princeton)CHERP
Genetics Home Reference (NIH)CHERP
Genomic and cartography
GoldenPath hg38 (UCSC)CHERP  -     chr19:16517889-16542452 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHERP  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblCHERP - 19p13.11 [CytoView hg19]  CHERP - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBICHERP [Mapview hg19]  CHERP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA782418 AB209730 AF536542 AK296883 AK298408
RefSeq transcript (Entrez)NM_006387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHERP
Cluster EST : UnigeneHs.740364 [ NCBI ]
CGAP (NCI)Hs.740364
Alternative Splicing GalleryENSG00000085872
Gene ExpressionCHERP [ NCBI-GEO ]   CHERP [ EBI - ARRAY_EXPRESS ]   CHERP [ SEEK ]   CHERP [ MEM ]
Gene Expression Viewer (FireBrowse)CHERP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10523
GTEX Portal (Tissue expression)CHERP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWX8
Splice isoforms : SwissVarQ8IWX8
PhosPhoSitePlusQ8IWX8
Domaine pattern : Prosite (Expaxy)CID (PS51391)    G_PATCH (PS50174)    SURP (PS50128)   
Domains : Interpro (EBI)CID_dom    ENTH_VHS    G_patch_dom    RNA_pol_II-bd    Surp   
Domain families : Pfam (Sanger)CTD_bind (PF04818)    G-patch (PF01585)    Surp (PF01805)   
Domain families : Pfam (NCBI)pfam04818    pfam01585    pfam01805   
Domain families : Smart (EMBL)G_patch (SM00443)  SWAP (SM00648)  
Conserved Domain (NCBI)CHERP
DMDM Disease mutations10523
Blocks (Seattle)CHERP
SuperfamilyQ8IWX8
Human Protein AtlasENSG00000085872
Peptide AtlasQ8IWX8
IPIIPI00333010   IPI01022946   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWX8
IntAct (EBI)Q8IWX8
FunCoupENSG00000085872
BioGRIDCHERP
STRING (EMBL)CHERP
ZODIACCHERP
Ontologies - Pathways
QuickGOQ8IWX8
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  cytoplasm  cellular calcium ion homeostasis  nervous system development  negative regulation of cell proliferation  membrane  sarcoplasmic reticulum membrane  ion channel binding  perinuclear region of cytoplasm  release of sequestered calcium ion into cytosol  positive regulation of NFAT protein import into nucleus  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  cytoplasm  cellular calcium ion homeostasis  nervous system development  negative regulation of cell proliferation  membrane  sarcoplasmic reticulum membrane  ion channel binding  perinuclear region of cytoplasm  release of sequestered calcium ion into cytosol  positive regulation of NFAT protein import into nucleus  
Pathways : KEGGSpliceosome   
NDEx NetworkCHERP
Atlas of Cancer Signalling NetworkCHERP
Wikipedia pathwaysCHERP
Orthology - Evolution
OrthoDB10523
GeneTree (enSembl)ENSG00000085872
Phylogenetic Trees/Animal Genes : TreeFamCHERP
HOVERGENQ8IWX8
HOGENOMQ8IWX8
Homologs : HomoloGeneCHERP
Homology/Alignments : Family Browser (UCSC)CHERP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHERP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHERP
dbVarCHERP
ClinVarCHERP
1000_GenomesCHERP 
Exome Variant ServerCHERP
ExAC (Exome Aggregation Consortium)CHERP (select the gene name)
Genetic variants : HAPMAP10523
Genomic Variants (DGV)CHERP [DGVbeta]
DECIPHERCHERP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHERP 
Mutations
ICGC Data PortalCHERP 
TCGA Data PortalCHERP 
Broad Tumor PortalCHERP
OASIS PortalCHERP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHERP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHERP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHERP
DgiDB (Drug Gene Interaction Database)CHERP
DoCM (Curated mutations)CHERP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHERP (select a term)
intoGenCHERP
Cancer3DCHERP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCHERP
Genetic Testing Registry CHERP
NextProtQ8IWX8 [Medical]
TSGene10523
GENETestsCHERP
Target ValidationCHERP
Huge Navigator CHERP [HugePedia]
snp3D : Map Gene to Disease10523
BioCentury BCIQCHERP
ClinGenCHERP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10523
Chemical/Pharm GKB GenePA26459
Clinical trialCHERP
Miscellaneous
canSAR (ICR)CHERP (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHERP
EVEXCHERP
GoPubMedCHERP
iHOPCHERP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:15 CEST 2017

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