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CHGB (chromogranin B)

Identity

Alias_namesSCG1
secretogranin 1
Alias_symbol (synonym)SgI
Other alias
HGNC (Hugo) CHGB
LocusID (NCBI) 1114
Atlas_Id 52182
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 5911328 and ends at 5925359 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHGB (20p12.3) / CYP17A1 (10q24.32)MON2 (12q14.1) / CHGB (20p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHGB   1930
Cards
Entrez_Gene (NCBI)CHGB  1114  chromogranin B
AliasesSCG1
GeneCards (Weizmann)CHGB
Ensembl hg19 (Hinxton)ENSG00000089199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089199 [Gene_View]  chr20:5911328-5925359 [Contig_View]  CHGB [Vega]
ICGC DataPortalENSG00000089199
TCGA cBioPortalCHGB
AceView (NCBI)CHGB
Genatlas (Paris)CHGB
WikiGenes1114
SOURCE (Princeton)CHGB
Genetics Home Reference (NIH)CHGB
Genomic and cartography
GoldenPath hg38 (UCSC)CHGB  -     chr20:5911328-5925359 +  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHGB  -     20p12.3   [Description]    (hg19-Feb_2009)
EnsemblCHGB - 20p12.3 [CytoView hg19]  CHGB - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBICHGB [Mapview hg19]  CHGB [Mapview hg38]
OMIM118920   
Gene and transcription
Genbank (Entrez)AB209712 AK054871 AK225125 AK289386 AK293536
RefSeq transcript (Entrez)NM_001819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHGB
Cluster EST : UnigeneHs.516874 [ NCBI ]
CGAP (NCI)Hs.516874
Alternative Splicing GalleryENSG00000089199
Gene ExpressionCHGB [ NCBI-GEO ]   CHGB [ EBI - ARRAY_EXPRESS ]   CHGB [ SEEK ]   CHGB [ MEM ]
Gene Expression Viewer (FireBrowse)CHGB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1114
GTEX Portal (Tissue expression)CHGB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05060   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05060  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05060
Splice isoforms : SwissVarP05060
PhosPhoSitePlusP05060
Domaine pattern : Prosite (Expaxy)GRANINS_1 (PS00422)    GRANINS_2 (PS00423)   
Domains : Interpro (EBI)Chromogranin_AB    Chromogranin_CS    Granin   
Domain families : Pfam (Sanger)Granin (PF01271)   
Domain families : Pfam (NCBI)pfam01271   
Conserved Domain (NCBI)CHGB
DMDM Disease mutations1114
Blocks (Seattle)CHGB
SuperfamilyP05060
Human Protein AtlasENSG00000089199
Peptide AtlasP05060
HPRD07512
IPIIPI00006601   IPI00647027   
Protein Interaction databases
DIP (DOE-UCLA)P05060
IntAct (EBI)P05060
FunCoupENSG00000089199
BioGRIDCHGB
STRING (EMBL)CHGB
ZODIACCHGB
Ontologies - Pathways
QuickGOP05060
Ontology : AmiGOhormone activity  protein binding  extracellular region  secretory granule  
Ontology : EGO-EBIhormone activity  protein binding  extracellular region  secretory granule  
NDEx NetworkCHGB
Atlas of Cancer Signalling NetworkCHGB
Wikipedia pathwaysCHGB
Orthology - Evolution
OrthoDB1114
GeneTree (enSembl)ENSG00000089199
Phylogenetic Trees/Animal Genes : TreeFamCHGB
HOVERGENP05060
HOGENOMP05060
Homologs : HomoloGeneCHGB
Homology/Alignments : Family Browser (UCSC)CHGB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHGB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHGB
dbVarCHGB
ClinVarCHGB
1000_GenomesCHGB 
Exome Variant ServerCHGB
ExAC (Exome Aggregation Consortium)CHGB (select the gene name)
Genetic variants : HAPMAP1114
Genomic Variants (DGV)CHGB [DGVbeta]
DECIPHERCHGB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHGB 
Mutations
ICGC Data PortalCHGB 
TCGA Data PortalCHGB 
Broad Tumor PortalCHGB
OASIS PortalCHGB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHGB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHGB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHGB
DgiDB (Drug Gene Interaction Database)CHGB
DoCM (Curated mutations)CHGB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHGB (select a term)
intoGenCHGB
Cancer3DCHGB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118920   
Orphanet
MedgenCHGB
Genetic Testing Registry CHGB
NextProtP05060 [Medical]
TSGene1114
GENETestsCHGB
Target ValidationCHGB
Huge Navigator CHGB [HugePedia]
snp3D : Map Gene to Disease1114
BioCentury BCIQCHGB
ClinGenCHGB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1114
Chemical/Pharm GKB GenePA26462
Clinical trialCHGB
Miscellaneous
canSAR (ICR)CHGB (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHGB
EVEXCHGB
GoPubMedCHGB
iHOPCHGB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:49:46 CEST 2017

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