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CHIC1 (cysteine rich hydrophobic domain 1)

Identity

Alias_namescysteine-rich hydrophobic domain 1
Alias_symbol (synonym)BRX
Other alias
HGNC (Hugo) CHIC1
LocusID (NCBI) 53344
Atlas_Id 46671
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 72782984 and ends at 72906937 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHIC1   1934
Cards
Entrez_Gene (NCBI)CHIC1  53344  cysteine rich hydrophobic domain 1
AliasesBRX
GeneCards (Weizmann)CHIC1
Ensembl hg19 (Hinxton)ENSG00000204116 [Gene_View]  chrX:72782984-72906937 [Contig_View]  CHIC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204116 [Gene_View]  chrX:72782984-72906937 [Contig_View]  CHIC1 [Vega]
ICGC DataPortalENSG00000204116
TCGA cBioPortalCHIC1
AceView (NCBI)CHIC1
Genatlas (Paris)CHIC1
WikiGenes53344
SOURCE (Princeton)CHIC1
Genetics Home Reference (NIH)CHIC1
Genomic and cartography
GoldenPath hg19 (UCSC)CHIC1  -     chrX:72782984-72906937 +  Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHIC1  -     Xq13.2   [Description]    (hg38-Dec_2013)
EnsemblCHIC1 - Xq13.2 [CytoView hg19]  CHIC1 - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBICHIC1 [Mapview hg19]  CHIC1 [Mapview hg38]
OMIM300922   
Gene and transcription
Genbank (Entrez)AK057786 AK295903 AK297768 AL832095 BC050300
RefSeq transcript (Entrez)NM_001039840 NM_001300884
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)CHIC1
Cluster EST : UnigeneHs.496323 [ NCBI ]
CGAP (NCI)Hs.496323
Alternative Splicing GalleryENSG00000204116
Gene ExpressionCHIC1 [ NCBI-GEO ]   CHIC1 [ EBI - ARRAY_EXPRESS ]   CHIC1 [ SEEK ]   CHIC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHIC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53344
GTEX Portal (Tissue expression)CHIC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXU3
Splice isoforms : SwissVarQ5VXU3
PhosPhoSitePlusQ5VXU3
Domains : Interpro (EBI)Golgin_A_7/ERF4   
Domain families : Pfam (Sanger)Erf4 (PF10256)   
Domain families : Pfam (NCBI)pfam10256   
Conserved Domain (NCBI)CHIC1
DMDM Disease mutations53344
Blocks (Seattle)CHIC1
SuperfamilyQ5VXU3
Human Protein AtlasENSG00000204116
Peptide AtlasQ5VXU3
IPIIPI00479473   IPI00554622   IPI00922432   IPI00936635   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXU3
IntAct (EBI)Q5VXU3
FunCoupENSG00000204116
BioGRIDCHIC1
STRING (EMBL)CHIC1
ZODIACCHIC1
Ontologies - Pathways
QuickGOQ5VXU3
Ontology : AmiGOintracellular  plasma membrane  transport  cytoplasmic, membrane-bounded vesicle  
Ontology : EGO-EBIintracellular  plasma membrane  transport  cytoplasmic, membrane-bounded vesicle  
NDEx NetworkCHIC1
Atlas of Cancer Signalling NetworkCHIC1
Wikipedia pathwaysCHIC1
Orthology - Evolution
OrthoDB53344
GeneTree (enSembl)ENSG00000204116
Phylogenetic Trees/Animal Genes : TreeFamCHIC1
HOVERGENQ5VXU3
HOGENOMQ5VXU3
Homologs : HomoloGeneCHIC1
Homology/Alignments : Family Browser (UCSC)CHIC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHIC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHIC1
dbVarCHIC1
ClinVarCHIC1
1000_GenomesCHIC1 
Exome Variant ServerCHIC1
ExAC (Exome Aggregation Consortium)CHIC1 (select the gene name)
Genetic variants : HAPMAP53344
Genomic Variants (DGV)CHIC1 [DGVbeta]
DECIPHER (Syndromes)X:72782984-72906937  ENSG00000204116
CONAN: Copy Number AnalysisCHIC1 
Mutations
ICGC Data PortalCHIC1 
TCGA Data PortalCHIC1 
Broad Tumor PortalCHIC1
OASIS PortalCHIC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHIC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHIC1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHIC1
DgiDB (Drug Gene Interaction Database)CHIC1
DoCM (Curated mutations)CHIC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHIC1 (select a term)
intoGenCHIC1
Cancer3DCHIC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300922   
Orphanet
MedgenCHIC1
Genetic Testing Registry CHIC1
NextProtQ5VXU3 [Medical]
TSGene53344
GENETestsCHIC1
Huge Navigator CHIC1 [HugePedia]
snp3D : Map Gene to Disease53344
BioCentury BCIQCHIC1
ClinGenCHIC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53344
Chemical/Pharm GKB GenePA26465
Clinical trialCHIC1
Miscellaneous
canSAR (ICR)CHIC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHIC1
EVEXCHIC1
GoPubMedCHIC1
iHOPCHIC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:26 CEST 2017

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