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CHID1 (chitinase domain containing 1)

Identity

Alias_symbol (synonym)MGC3234
FLJ42707
Other aliasGL008
SI-CLP
SICLP
HGNC (Hugo) CHID1
LocusID (NCBI) 66005
Atlas_Id 54216
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 867859 and ends at 910874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHID1 (11p15.5) / CORO7 (16p13.3)CHID1 (11p15.5) / PLCL1 (2q33.1)HADHA (2p23.3) / CHID1 (11p15.5)
RRBP1 (20p12.1) / CHID1 (11p15.5)RRBP1 20p12.1 / CHID1 11p15.5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHID1   28474
Cards
Entrez_Gene (NCBI)CHID1  66005  chitinase domain containing 1
AliasesGL008; SI-CLP; SICLP
GeneCards (Weizmann)CHID1
Ensembl hg19 (Hinxton)ENSG00000177830 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177830 [Gene_View]  chr11:867859-910874 [Contig_View]  CHID1 [Vega]
ICGC DataPortalENSG00000177830
TCGA cBioPortalCHID1
AceView (NCBI)CHID1
Genatlas (Paris)CHID1
WikiGenes66005
SOURCE (Princeton)CHID1
Genetics Home Reference (NIH)CHID1
Genomic and cartography
GoldenPath hg38 (UCSC)CHID1  -     chr11:867859-910874 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHID1  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblCHID1 - 11p15.5 [CytoView hg19]  CHID1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBICHID1 [Mapview hg19]  CHID1 [Mapview hg38]
OMIM615692   
Gene and transcription
Genbank (Entrez)AF212229 AK027711 AK075413 AK124697 AK225025
RefSeq transcript (Entrez)NM_001142674 NM_001142675 NM_001142676 NM_001142677 NM_023947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHID1
Cluster EST : UnigeneHs.144468 [ NCBI ]
CGAP (NCI)Hs.144468
Alternative Splicing GalleryENSG00000177830
Gene ExpressionCHID1 [ NCBI-GEO ]   CHID1 [ EBI - ARRAY_EXPRESS ]   CHID1 [ SEEK ]   CHID1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHID1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)66005
GTEX Portal (Tissue expression)CHID1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWS9
Splice isoforms : SwissVarQ9BWS9
PhosPhoSitePlusQ9BWS9
Domains : Interpro (EBI)Chitinase_II    Glyco_hydro18_cat    Glyco_hydro_catalytic_dom    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Glyco_hydro_18 (PF00704)   
Domain families : Pfam (NCBI)pfam00704   
Domain families : Smart (EMBL)Glyco_18 (SM00636)  
Conserved Domain (NCBI)CHID1
DMDM Disease mutations66005
Blocks (Seattle)CHID1
PDB (SRS)3BXW   
PDB (PDBSum)3BXW   
PDB (IMB)3BXW   
PDB (RSDB)3BXW   
Structural Biology KnowledgeBase3BXW   
SCOP (Structural Classification of Proteins)3BXW   
CATH (Classification of proteins structures)3BXW   
SuperfamilyQ9BWS9
Human Protein AtlasENSG00000177830
Peptide AtlasQ9BWS9
HPRD14550
IPIIPI00940998   IPI00301185   IPI00045536   IPI00306719   IPI00977607   IPI00977530   IPI00975826   IPI00976319   IPI00975717   IPI00983743   IPI00983134   IPI00982170   IPI00979059   IPI00982745   IPI00976732   IPI00978449   IPI00985045   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWS9
IntAct (EBI)Q9BWS9
FunCoupENSG00000177830
BioGRIDCHID1
STRING (EMBL)CHID1
ZODIACCHID1
Ontologies - Pathways
QuickGOQ9BWS9
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  extracellular space  nucleus  lysosome  late endosome  trans-Golgi network  carbohydrate metabolic process  chitin binding  membrane  lysosomal lumen  innate immune response  extracellular exosome  oligosaccharide binding  negative regulation of cytokine production involved in inflammatory response  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  extracellular space  nucleus  lysosome  late endosome  trans-Golgi network  carbohydrate metabolic process  chitin binding  membrane  lysosomal lumen  innate immune response  extracellular exosome  oligosaccharide binding  negative regulation of cytokine production involved in inflammatory response  
NDEx NetworkCHID1
Atlas of Cancer Signalling NetworkCHID1
Wikipedia pathwaysCHID1
Orthology - Evolution
OrthoDB66005
GeneTree (enSembl)ENSG00000177830
Phylogenetic Trees/Animal Genes : TreeFamCHID1
HOVERGENQ9BWS9
HOGENOMQ9BWS9
Homologs : HomoloGeneCHID1
Homology/Alignments : Family Browser (UCSC)CHID1
Gene fusions - Rearrangements
Fusion : MitelmanCHID1/CORO7 [11p15.5/16p13.3]  
Fusion : MitelmanRRBP1/CHID1 [20p12.1/11p15.5]  [t(11;20)(p15;p12)]  
Fusion: TCGARRBP1 20p12.1 CHID1 11p15.5 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHID1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHID1
dbVarCHID1
ClinVarCHID1
1000_GenomesCHID1 
Exome Variant ServerCHID1
ExAC (Exome Aggregation Consortium)CHID1 (select the gene name)
Genetic variants : HAPMAP66005
Genomic Variants (DGV)CHID1 [DGVbeta]
DECIPHERCHID1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHID1 
Mutations
ICGC Data PortalCHID1 
TCGA Data PortalCHID1 
Broad Tumor PortalCHID1
OASIS PortalCHID1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHID1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHID1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHID1
DgiDB (Drug Gene Interaction Database)CHID1
DoCM (Curated mutations)CHID1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHID1 (select a term)
intoGenCHID1
Cancer3DCHID1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615692   
Orphanet
MedgenCHID1
Genetic Testing Registry CHID1
NextProtQ9BWS9 [Medical]
TSGene66005
GENETestsCHID1
Target ValidationCHID1
Huge Navigator CHID1 [HugePedia]
snp3D : Map Gene to Disease66005
BioCentury BCIQCHID1
ClinGenCHID1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD66005
Chemical/Pharm GKB GenePA142672118
Clinical trialCHID1
Miscellaneous
canSAR (ICR)CHID1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHID1
EVEXCHID1
GoPubMedCHID1
iHOPCHID1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:28:16 CEST 2017

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