Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHL1-AS2 (CHL1 antisense RNA 2)

Identity

Other alias-
HGNC (Hugo) CHL1-AS2
LocusID (NCBI) 101927174
Atlas_Id 80655
Location 3p26.3  [Link to chromosome band 3p26]
Location_base_pair Starts at 195758 and ends at 197341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHL1-AS2   40147
Cards
Entrez_Gene (NCBI)CHL1-AS2  101927174  CHL1 antisense RNA 2
Aliases
GeneCards (Weizmann)CHL1-AS2
Ensembl hg19 (Hinxton)ENSG00000224318 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224318 [Gene_View]  ENSG00000224318 [Sequence]  chr3:195758-197341 [Contig_View]  CHL1-AS2 [Vega]
ICGC DataPortalENSG00000224318
TCGA cBioPortalCHL1-AS2
AceView (NCBI)CHL1-AS2
Genatlas (Paris)CHL1-AS2
WikiGenes101927174
SOURCE (Princeton)CHL1-AS2
Genetics Home Reference (NIH)CHL1-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)CHL1-AS2  -     chr3:195758-197341 -  3p26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHL1-AS2  -     3p26.3   [Description]    (hg19-Feb_2009)
GoldenPathCHL1-AS2 - 3p26.3 [CytoView hg19]  CHL1-AS2 - 3p26.3 [CytoView hg38]
ImmunoBaseENSG00000224318
Mapping of homologs : NCBICHL1-AS2 [Mapview hg19]  CHL1-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW001783 BF433317 BM712886 BM988194
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHL1-AS2
Alternative Splicing GalleryENSG00000224318
Gene ExpressionCHL1-AS2 [ NCBI-GEO ]   CHL1-AS2 [ EBI - ARRAY_EXPRESS ]   CHL1-AS2 [ SEEK ]   CHL1-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CHL1-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927174
GTEX Portal (Tissue expression)CHL1-AS2
Human Protein AtlasENSG00000224318-CHL1-AS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CHL1-AS2
DMDM Disease mutations101927174
Blocks (Seattle)CHL1-AS2
Human Protein Atlas [tissue]ENSG00000224318-CHL1-AS2 [tissue]
Protein Interaction databases
FunCoupENSG00000224318
BioGRIDCHL1-AS2
STRING (EMBL)CHL1-AS2
ZODIACCHL1-AS2
Ontologies - Pathways
Huge Navigator CHL1-AS2 [HugePedia]
snp3D : Map Gene to Disease101927174
BioCentury BCIQCHL1-AS2
ClinGenCHL1-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927174
Clinical trialCHL1-AS2
Miscellaneous
canSAR (ICR)CHL1-AS2 (select the gene name)
DataMed IndexCHL1-AS2
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHL1-AS2
EVEXCHL1-AS2
GoPubMedCHL1-AS2
iHOPCHL1-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:26:42 CET 2020

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