Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHM (choroideremia (Rab escort protein 1))

Identity

Other namesDXS540
GGTA
HSD-32
REP-1
TCD
HGNC (Hugo) CHM
LocusID (NCBI) 1121
Location Xq21.2
Location_base_pair Starts at 85116185 and ends at 85302566 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHM   1940
Cards
Entrez_Gene (NCBI)CHM  1121  choroideremia (Rab escort protein 1)
GeneCards (Weizmann)CHM
Ensembl (Hinxton)ENSG00000188419 [Gene_View]  chrX:85116185-85302566 [Contig_View]  CHM [Vega]
ICGC DataPortalENSG00000188419
cBioPortalCHM
AceView (NCBI)CHM
Genatlas (Paris)CHM
WikiGenes1121
SOURCE (Princeton)NM_000390 NM_001037312 NM_001145414
Genomic and cartography
GoldenPath (UCSC)CHM  -  Xq21.2   chrX:85116185-85302566 -  Xq21.2   [Description]    (hg19-Feb_2009)
EnsemblCHM - Xq21.2 [CytoView]
Mapping of homologs : NCBICHM [Mapview]
OMIM300390   303100   
Gene and transcription
Genbank (Entrez)AK095883 AK291160 AK299323 AK312443 AY255796
RefSeq transcript (Entrez)NM_000390 NM_001037312 NM_001145414
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_009874 NT_011651 NW_001842380 NW_004929444
Consensus coding sequences : CCDS (NCBI)CHM
Cluster EST : UnigeneHs.496449 [ NCBI ]
CGAP (NCI)Hs.496449
Alternative Splicing : Fast-db (Paris)GSHG0032209
Alternative Splicing GalleryENSG00000188419
Gene ExpressionCHM [ NCBI-GEO ]     CHM [ SEEK ]   CHM [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24386 (Uniprot)
NextProtP24386  [Medical]
With graphics : InterProP24386
Splice isoforms : SwissVarP24386 (Swissvar)
Domains : Interpro (EBI)GDP_dissociation_inhibitor [organisation]   Rab_escort [organisation]   Rab_geranylTrfase_A_euk [organisation]  
Related proteins : CluSTrP24386
Domain families : Pfam (Sanger)GDI (PF00996)   
Domain families : Pfam (NCBI)pfam00996   
DMDM Disease mutations1121
Blocks (Seattle)P24386
Human Protein AtlasENSG00000188419 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP24386
HPRD02312
IPIIPI00028099   IPI01015378   IPI00167548   IPI00641814   
Protein Interaction databases
DIP (DOE-UCLA)P24386
IntAct (EBI)P24386
FunCoupENSG00000188419
BioGRIDCHM
InParanoidP24386
Interologous Interaction database P24386
IntegromeDBCHM
STRING (EMBL)CHM
Ontologies - Pathways
Ontology : AmiGOblood vessel development  Rab geranylgeranyltransferase activity  GTPase activator activity  Rab-protein geranylgeranyltransferase complex  intracellular protein transport  visual perception  protein geranylgeranylation  response to stimulus  
Ontology : EGO-EBIblood vessel development  Rab geranylgeranyltransferase activity  GTPase activator activity  Rab-protein geranylgeranyltransferase complex  intracellular protein transport  visual perception  protein geranylgeranylation  response to stimulus  
Protein Interaction DatabaseCHM
Wikipedia pathwaysCHM
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHM
snp3D : Map Gene to Disease1121
SNP (GeneSNP Utah)CHM
SNP : HGBaseCHM
Genetic variants : HAPMAPCHM
Exome VariantCHM
1000_GenomesCHM 
ICGC programENSG00000188419 
Somatic Mutations in Cancer : COSMICCHM 
CONAN: Copy Number AnalysisCHM 
Mutations and Diseases : HGMDCHM
Genomic VariantsCHM  CHM [DGVbeta]
dbVarCHM
ClinVarCHM
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM300390    303100   
MedgenCHM
GENETestsCHM
Disease Genetic AssociationCHM
Huge Navigator CHM [HugePedia]  CHM [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCHM
Homology/Alignments : Family Browser (UCSC)CHM
Phylogenetic Trees/Animal Genes : TreeFamCHM
Chemical/Protein Interactions : CTD1121
Chemical/Pharm GKB GenePA26471
Clinical trialCHM
Cancer Resource (Charite)ENSG00000188419
Other databases
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
CoreMineCHM
iHOPCHM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:49:49 CEST 2014

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