Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CHMP1A (charged multivesicular body protein 1A)

Identity

Other namesCHMP1
PCH8
PCOLN3
PRSM1
VPS46-1
VPS46A
HGNC (Hugo) CHMP1A
LocusID (NCBI) 5119
Location 16q24.3
Location_base_pair Starts at 89710839 and ends at 89724193 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHMP1A   8740
Entrez_Gene (NCBI)CHMP1A  5119  charged multivesicular body protein 1A
Cards
GeneCards (Weizmann)CHMP1A
Ensembl (Hinxton)ENSG00000131165 [Gene_View]  chr16:89710839-89724193 [Contig_View]  CHMP1A [Vega]
AceView (NCBI)CHMP1A
Genatlas (Paris)CHMP1A
SOURCE (Stanford)NM_001083314 NM_002768
Genomic and cartography
GoldenPath (UCSC)CHMP1A  -  16q24.3   chr16:89710839-89724193 -  16q24.3   [Description]    (hg19-Feb_2009)
EnsemblCHMP1A - 16q24.3 [CytoView]
Mapping of homologs : NCBICHMP1A [Mapview]
OMIM164010   614961   
Gene and transcription
Genbank (Entrez)AF281063 AI356110 AI362697 AK302055 BC007527
RefSeq transcript (SRS)NM_001083314 NM_002768
RefSeq transcript (Entrez)NM_001083314 NM_002768
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NG_033005 NT_010542 NW_001838336 NW_004078088
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_033005 NT_010542 NW_001838336 NW_004078088
Consensus coding sequences : CCDS (NCBI)CHMP1A
Cluster EST : UnigeneHs.589427 [ SRS ] Hs.589427 [ NCBI ]
CGAP (NCI)Hs.589427
Alternative Splicing : Fast-db (Paris)GSHG0012088
Alternative Splicing GalleryENSG00000131165
Gene ExpressionCHMP1A [ NCBI-GEO ]   CHMP1A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD42 (SRS) Q9HD42 (Uniprot)
NextProtQ9HD42
With graphics : InterProQ9HD42
Splice isoforms : SwissVarQ9HD42(Swissvar)
Domains : Interpro (SRS)Snf7   
Domains : Interpro (EBI)Snf7   
Related proteins : CluSTrQ9HD42
Domain families : Pfam (SRS)Snf7 (PF03357)   
Domain families : Pfam (Sanger)Snf7 (PF03357)   
Domain families : Pfam (NCBI)pfam03357   
DMDM5119
Blocks (Seattle)Q9HD42
PDB (SRS)2JQ9   
PDB (PDBSum)2JQ9   
PDB (IMB)2JQ9   
PDB (RSDB)2JQ9   
Human Protein AtlasENSG00000131165
HPRD01237
IPIIPI00382452   IPI01015759   IPI01022903   IPI01022543   IPI00003169   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD42
IntAct (EBI)Q9HD42
FunCoupENSG00000131165
REACTOMECHMP1A
Protein Interaction Database5119
BioGRIDCHMP1A
InParanoidQ9HD42
Interologous Interaction database Q9HD42
IntegromeDBCHMP1A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHMP1A
SNP (GeneSNP Utah)CHMP1A
SNP : HGBaseCHMP1A
Genetic variants : HAPMAPCHMP1A
Somatic Mutations in Cancer : COSMICCHMP1A 
CONAN: Copy Number AnalysisCHMP1A 
Mutations and Diseases : HGMDCHMP1A
OMIM164010    614961   
GENETests164010    614961   
Disease Genetic AssociationCHMP1A
Huge Navigator CHMP1A [HugePedia]  CHMP1A [HugeCancerGEM]
Genomic VariantsCHMP1A  CHMP1A [DGVbeta]
snp3D : Map Gene to Disease5119
General knowledge
Homologs : HomoloGeneCHMP1A
Homology/Alignments : Family Browser (UCSC)CHMP1A
Phylogenetic Trees/Animal Genes : TreeFamCHMP1A
Chemical/Protein Interactions : CTD5119
Chemical/Pharm GKB GenePA33085
Clinical trialCHMP1A
Cancer Resource (Charite)ENSG00000131165
Ontology : AmiGOcondensed nuclear chromosome  protein binding  early endosome  microtubule organizing center  transcription, DNA-dependent  mitotic chromosome condensation  metallopeptidase activity  zinc ion binding  endosome membrane  endomembrane system  protein transport  vesicle-mediated transport  nuclear matrix  gene silencing  protein domain specific binding  negative regulation of transcription by glucose  negative regulation of S phase of mitotic cell cycle  negative regulation of transcription, DNA-dependent  cell division  
Ontology : EGO-EBIcondensed nuclear chromosome  protein binding  early endosome  microtubule organizing center  transcription, DNA-dependent  mitotic chromosome condensation  metallopeptidase activity  zinc ion binding  endosome membrane  endomembrane system  protein transport  vesicle-mediated transport  nuclear matrix  gene silencing  protein domain specific binding  negative regulation of transcription by glucose  negative regulation of S phase of mitotic cell cycle  negative regulation of transcription, DNA-dependent  cell division  
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneCHMP1A
iHOPCHMP1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:41 CEST 2013
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