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CHMP6 (charged multivesicular body protein 6)

Identity

Alias_nameschromatin modifying protein 6
Alias_symbol (synonym)FLJ11749
VPS20
Other alias
HGNC (Hugo) CHMP6
LocusID (NCBI) 79643
Atlas_Id 61807
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80991841 and ends at 81000133 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHMP6   25675
Cards
Entrez_Gene (NCBI)CHMP6  79643  charged multivesicular body protein 6
AliasesVPS20
GeneCards (Weizmann)CHMP6
Ensembl hg19 (Hinxton)ENSG00000176108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176108 [Gene_View]  chr17:80991841-81000133 [Contig_View]  CHMP6 [Vega]
ICGC DataPortalENSG00000176108
TCGA cBioPortalCHMP6
AceView (NCBI)CHMP6
Genatlas (Paris)CHMP6
WikiGenes79643
SOURCE (Princeton)CHMP6
Genetics Home Reference (NIH)CHMP6
Genomic and cartography
GoldenPath hg38 (UCSC)CHMP6  -     chr17:80991841-81000133 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHMP6  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCHMP6 - 17q25.3 [CytoView hg19]  CHMP6 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICHMP6 [Mapview hg19]  CHMP6 [Mapview hg38]
OMIM610901   
Gene and transcription
Genbank (Entrez)AK021811 AK223187 AK292105 AY329087 BC010108
RefSeq transcript (Entrez)NM_024591
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHMP6
Cluster EST : UnigeneHs.514560 [ NCBI ]
CGAP (NCI)Hs.514560
Alternative Splicing GalleryENSG00000176108
Gene ExpressionCHMP6 [ NCBI-GEO ]   CHMP6 [ EBI - ARRAY_EXPRESS ]   CHMP6 [ SEEK ]   CHMP6 [ MEM ]
Gene Expression Viewer (FireBrowse)CHMP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79643
GTEX Portal (Tissue expression)CHMP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FZ7
Splice isoforms : SwissVarQ96FZ7
PhosPhoSitePlusQ96FZ7
Domains : Interpro (EBI)Snf7_fam   
Domain families : Pfam (Sanger)Snf7 (PF03357)   
Domain families : Pfam (NCBI)pfam03357   
Conserved Domain (NCBI)CHMP6
DMDM Disease mutations79643
Blocks (Seattle)CHMP6
PDB (SRS)2K3W    3HTU   
PDB (PDBSum)2K3W    3HTU   
PDB (IMB)2K3W    3HTU   
PDB (RSDB)2K3W    3HTU   
Structural Biology KnowledgeBase2K3W    3HTU   
SCOP (Structural Classification of Proteins)2K3W    3HTU   
CATH (Classification of proteins structures)2K3W    3HTU   
SuperfamilyQ96FZ7
Human Protein AtlasENSG00000176108
Peptide AtlasQ96FZ7
HPRD08564
IPIIPI00305423   
Protein Interaction databases
DIP (DOE-UCLA)Q96FZ7
IntAct (EBI)Q96FZ7
FunCoupENSG00000176108
BioGRIDCHMP6
STRING (EMBL)CHMP6
ZODIACCHMP6
Ontologies - Pathways
QuickGOQ96FZ7
Ontology : AmiGOESCRT III complex  ESCRT III complex  cell separation after cytokinesis  protein binding  cytosol  nucleus organization  vacuolar transport  mitotic metaphase plate congression  endosome membrane  protein transport  membrane  endosomal transport  macroautophagy  viral life cycle  late endosome membrane  multivesicular body assembly  viral budding via host ESCRT complex  protein N-terminus binding  extracellular exosome  regulation of exosomal secretion  ESCRT III complex assembly  
Ontology : EGO-EBIESCRT III complex  ESCRT III complex  cell separation after cytokinesis  protein binding  cytosol  nucleus organization  vacuolar transport  mitotic metaphase plate congression  endosome membrane  protein transport  membrane  endosomal transport  macroautophagy  viral life cycle  late endosome membrane  multivesicular body assembly  viral budding via host ESCRT complex  protein N-terminus binding  extracellular exosome  regulation of exosomal secretion  ESCRT III complex assembly  
Pathways : KEGGEndocytosis   
NDEx NetworkCHMP6
Atlas of Cancer Signalling NetworkCHMP6
Wikipedia pathwaysCHMP6
Orthology - Evolution
OrthoDB79643
GeneTree (enSembl)ENSG00000176108
Phylogenetic Trees/Animal Genes : TreeFamCHMP6
HOVERGENQ96FZ7
HOGENOMQ96FZ7
Homologs : HomoloGeneCHMP6
Homology/Alignments : Family Browser (UCSC)CHMP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHMP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHMP6
dbVarCHMP6
ClinVarCHMP6
1000_GenomesCHMP6 
Exome Variant ServerCHMP6
ExAC (Exome Aggregation Consortium)CHMP6 (select the gene name)
Genetic variants : HAPMAP79643
Genomic Variants (DGV)CHMP6 [DGVbeta]
DECIPHERCHMP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHMP6 
Mutations
ICGC Data PortalCHMP6 
TCGA Data PortalCHMP6 
Broad Tumor PortalCHMP6
OASIS PortalCHMP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHMP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHMP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHMP6
DgiDB (Drug Gene Interaction Database)CHMP6
DoCM (Curated mutations)CHMP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHMP6 (select a term)
intoGenCHMP6
Cancer3DCHMP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610901   
Orphanet
MedgenCHMP6
Genetic Testing Registry CHMP6
NextProtQ96FZ7 [Medical]
TSGene79643
GENETestsCHMP6
Target ValidationCHMP6
Huge Navigator CHMP6 [HugePedia]
snp3D : Map Gene to Disease79643
BioCentury BCIQCHMP6
ClinGenCHMP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79643
Chemical/Pharm GKB GenePA142672114
Clinical trialCHMP6
Miscellaneous
canSAR (ICR)CHMP6 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHMP6
EVEXCHMP6
GoPubMedCHMP6
iHOPCHMP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:47 CEST 2017

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