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CHMP7 (charged multivesicular body protein 7)

Identity

Alias_namesCHMP family, member 7
Alias_symbol (synonym)MGC29816
Other alias-
HGNC (Hugo) CHMP7
LocusID (NCBI) 91782
Atlas_Id 61808
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 23246592 and ends at 23262000 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHMP7 (8p21.3) / CHMP7 (8p21.3)LOC389641 (8p21.3) / CHMP7 (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHMP7   28439
Cards
Entrez_Gene (NCBI)CHMP7  91782  charged multivesicular body protein 7
Aliases
GeneCards (Weizmann)CHMP7
Ensembl hg19 (Hinxton)ENSG00000147457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147457 [Gene_View]  chr8:23246592-23262000 [Contig_View]  CHMP7 [Vega]
ICGC DataPortalENSG00000147457
TCGA cBioPortalCHMP7
AceView (NCBI)CHMP7
Genatlas (Paris)CHMP7
WikiGenes91782
SOURCE (Princeton)CHMP7
Genetics Home Reference (NIH)CHMP7
Genomic and cartography
GoldenPath hg38 (UCSC)CHMP7  -     chr8:23246592-23262000 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHMP7  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblCHMP7 - 8p21.3 [CytoView hg19]  CHMP7 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBICHMP7 [Mapview hg19]  CHMP7 [Mapview hg38]
OMIM611130   
Gene and transcription
Genbank (Entrez)AK021776 AK092500 AK097202 AK296592 AK315664
RefSeq transcript (Entrez)NM_001317899 NM_152272
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHMP7
Cluster EST : UnigeneHs.5019 [ NCBI ]
CGAP (NCI)Hs.5019
Alternative Splicing GalleryENSG00000147457
Gene ExpressionCHMP7 [ NCBI-GEO ]   CHMP7 [ EBI - ARRAY_EXPRESS ]   CHMP7 [ SEEK ]   CHMP7 [ MEM ]
Gene Expression Viewer (FireBrowse)CHMP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91782
GTEX Portal (Tissue expression)CHMP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUX9
Splice isoforms : SwissVarQ8WUX9
PhosPhoSitePlusQ8WUX9
Domains : Interpro (EBI)Snf7_fam   
Domain families : Pfam (Sanger)Snf7 (PF03357)   
Domain families : Pfam (NCBI)pfam03357   
Conserved Domain (NCBI)CHMP7
DMDM Disease mutations91782
Blocks (Seattle)CHMP7
SuperfamilyQ8WUX9
Human Protein AtlasENSG00000147457
Peptide AtlasQ8WUX9
HPRD14534
IPIIPI00395463   IPI00789431   IPI00797449   IPI00974485   IPI00910996   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUX9
IntAct (EBI)Q8WUX9
FunCoupENSG00000147457
BioGRIDCHMP7
STRING (EMBL)CHMP7
ZODIACCHMP7
Ontologies - Pathways
QuickGOQ8WUX9
Ontology : AmiGOESCRT III complex  cell separation after cytokinesis  protein binding  nucleus  nuclear envelope  cytosol  cytosol  nucleus organization  mitotic metaphase plate congression  protein transporter activity  exit from mitosis  protein transport  endosomal transport  viral life cycle  nuclear envelope reassembly  multivesicular body assembly  viral budding via host ESCRT complex  late endosome to vacuole transport  ESCRT III complex disassembly  
Ontology : EGO-EBIESCRT III complex  cell separation after cytokinesis  protein binding  nucleus  nuclear envelope  cytosol  cytosol  nucleus organization  mitotic metaphase plate congression  protein transporter activity  exit from mitosis  protein transport  endosomal transport  viral life cycle  nuclear envelope reassembly  multivesicular body assembly  viral budding via host ESCRT complex  late endosome to vacuole transport  ESCRT III complex disassembly  
Pathways : KEGGEndocytosis   
NDEx NetworkCHMP7
Atlas of Cancer Signalling NetworkCHMP7
Wikipedia pathwaysCHMP7
Orthology - Evolution
OrthoDB91782
GeneTree (enSembl)ENSG00000147457
Phylogenetic Trees/Animal Genes : TreeFamCHMP7
HOVERGENQ8WUX9
HOGENOMQ8WUX9
Homologs : HomoloGeneCHMP7
Homology/Alignments : Family Browser (UCSC)CHMP7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHMP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHMP7
dbVarCHMP7
ClinVarCHMP7
1000_GenomesCHMP7 
Exome Variant ServerCHMP7
ExAC (Exome Aggregation Consortium)CHMP7 (select the gene name)
Genetic variants : HAPMAP91782
Genomic Variants (DGV)CHMP7 [DGVbeta]
DECIPHERCHMP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHMP7 
Mutations
ICGC Data PortalCHMP7 
TCGA Data PortalCHMP7 
Broad Tumor PortalCHMP7
OASIS PortalCHMP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHMP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHMP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHMP7
DgiDB (Drug Gene Interaction Database)CHMP7
DoCM (Curated mutations)CHMP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHMP7 (select a term)
intoGenCHMP7
Cancer3DCHMP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611130   
Orphanet
MedgenCHMP7
Genetic Testing Registry CHMP7
NextProtQ8WUX9 [Medical]
TSGene91782
GENETestsCHMP7
Target ValidationCHMP7
Huge Navigator CHMP7 [HugePedia]
snp3D : Map Gene to Disease91782
BioCentury BCIQCHMP7
ClinGenCHMP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91782
Chemical/Pharm GKB GenePA142672115
Clinical trialCHMP7
Miscellaneous
canSAR (ICR)CHMP7 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHMP7
EVEXCHMP7
GoPubMedCHMP7
iHOPCHMP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:47 CEST 2017

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