Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHODL-AS1 (CHODL antisense RNA 1)

Identity

Alias_namesC21orf39
NCRNA00157
chromosome 21 open reading frame 39
non-protein coding RNA 157
CHODL antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) CHODL-AS1
LocusID (NCBI) 54075
Atlas_Id 54217
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 19207989 and ends at 19257925 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGEF18 (19p13.2) / CHODL-AS1 (21q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHODL-AS1   1279
Cards
Entrez_Gene (NCBI)CHODL-AS1  54075  CHODL antisense RNA 1
AliasesC21orf39; NCRNA00157
GeneCards (Weizmann)CHODL-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr21:19207989-19257925 [Contig_View]  CHODL-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:19207989-19257925 [Contig_View]  CHODL-AS1 [Vega]
TCGA cBioPortalCHODL-AS1
AceView (NCBI)CHODL-AS1
Genatlas (Paris)CHODL-AS1
WikiGenes54075
SOURCE (Princeton)CHODL-AS1
Genetics Home Reference (NIH)CHODL-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)CHODL-AS1  -     chr21:19207989-19257925 -  21q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHODL-AS1  -     21q21.1   [Description]    (hg38-Dec_2013)
EnsemblCHODL-AS1 - 21q21.1 [CytoView hg19]  CHODL-AS1 - 21q21.1 [CytoView hg38]
Mapping of homologs : NCBICHODL-AS1 [Mapview hg19]  CHODL-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HG511611 T74237
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)CHODL-AS1
Cluster EST : UnigeneHs.404306 [ NCBI ]
CGAP (NCI)Hs.404306
Gene ExpressionCHODL-AS1 [ NCBI-GEO ]   CHODL-AS1 [ EBI - ARRAY_EXPRESS ]   CHODL-AS1 [ SEEK ]   CHODL-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHODL-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)54075
GTEX Portal (Tissue expression)CHODL-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CHODL-AS1
DMDM Disease mutations54075
Blocks (Seattle)CHODL-AS1
Protein Interaction databases
BioGRIDCHODL-AS1
STRING (EMBL)CHODL-AS1
ZODIACCHODL-AS1
Ontologies - Pathways
Huge Navigator CHODL-AS1 [HugePedia]
snp3D : Map Gene to Disease54075
BioCentury BCIQCHODL-AS1
ClinGenCHODL-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54075
Chemical/Pharm GKB GenePA164723724
Clinical trialCHODL-AS1
Miscellaneous
canSAR (ICR)CHODL-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHODL-AS1
EVEXCHODL-AS1
GoPubMedCHODL-AS1
iHOPCHODL-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:29 CEST 2017

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