Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CHORDC1 (cysteine and histidine rich domain containing 1)

Identity

Alias_namescysteine and histidine-rich domain (CHORD)-containing
Alias_symbol (synonym)CHP1
CHP-1
Other alias
HGNC (Hugo) CHORDC1
LocusID (NCBI) 26973
Atlas_Id 40079
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 90200430 and ends at 90223364 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHORDC1 (11q14.3) / ANKRD34B (5q14.1)POLR1D (13q12.2) / CHORDC1 (11q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHORDC1   14525
Cards
Entrez_Gene (NCBI)CHORDC1  26973  cysteine and histidine rich domain containing 1
AliasesCHP1
GeneCards (Weizmann)CHORDC1
Ensembl hg19 (Hinxton)ENSG00000110172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110172 [Gene_View]  ENSG00000110172 [Sequence]  chr11:90200430-90223364 [Contig_View]  CHORDC1 [Vega]
ICGC DataPortalENSG00000110172
TCGA cBioPortalCHORDC1
AceView (NCBI)CHORDC1
Genatlas (Paris)CHORDC1
WikiGenes26973
SOURCE (Princeton)CHORDC1
Genetics Home Reference (NIH)CHORDC1
Genomic and cartography
GoldenPath hg38 (UCSC)CHORDC1  -     chr11:90200430-90223364 -  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHORDC1  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblCHORDC1 - 11q14.3 [CytoView hg19]  CHORDC1 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBICHORDC1 [Mapview hg19]  CHORDC1 [Mapview hg38]
OMIM604353   
Gene and transcription
Genbank (Entrez)AF123249 AF192466 AF217505 AK022848 AK094608
RefSeq transcript (Entrez)NM_001144073 NM_012124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHORDC1
Cluster EST : UnigeneHs.112482 [ NCBI ]
CGAP (NCI)Hs.112482
Alternative Splicing GalleryENSG00000110172
Gene ExpressionCHORDC1 [ NCBI-GEO ]   CHORDC1 [ EBI - ARRAY_EXPRESS ]   CHORDC1 [ SEEK ]   CHORDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHORDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26973
GTEX Portal (Tissue expression)CHORDC1
Human Protein AtlasENSG00000110172-CHORDC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHD1
Splice isoforms : SwissVarQ9UHD1
PhosPhoSitePlusQ9UHD1
Domaine pattern : Prosite (Expaxy)CHORD (PS51401)    CS (PS51203)   
Domains : Interpro (EBI)CHORD_dom    CS_dom    HSP20-like_chaperone   
Domain families : Pfam (Sanger)CHORD (PF04968)    CS (PF04969)   
Domain families : Pfam (NCBI)pfam04968    pfam04969   
Conserved Domain (NCBI)CHORDC1
DMDM Disease mutations26973
Blocks (Seattle)CHORDC1
PDB (SRS)2YRT   
PDB (PDBSum)2YRT   
PDB (IMB)2YRT   
PDB (RSDB)2YRT   
Structural Biology KnowledgeBase2YRT   
SCOP (Structural Classification of Proteins)2YRT   
CATH (Classification of proteins structures)2YRT   
SuperfamilyQ9UHD1
Human Protein Atlas [tissue]ENSG00000110172-CHORDC1 [tissue]
Peptide AtlasQ9UHD1
HPRD05072
IPIIPI00015897   IPI00885057   IPI00978113   IPI00977749   IPI00978816   IPI00981208   IPI00980203   IPI00980554   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHD1
IntAct (EBI)Q9UHD1
FunCoupENSG00000110172
BioGRIDCHORDC1
STRING (EMBL)CHORDC1
ZODIACCHORDC1
Ontologies - Pathways
QuickGOQ9UHD1
Ontology : AmiGOprotein binding  ATP binding  cellular_component  zinc ion binding  regulation of centrosome duplication  ADP binding  Hsp90 protein binding  chaperone-mediated protein folding  regulation of cellular response to heat  negative regulation of Rho-dependent protein serine/threonine kinase activity  
Ontology : EGO-EBIprotein binding  ATP binding  cellular_component  zinc ion binding  regulation of centrosome duplication  ADP binding  Hsp90 protein binding  chaperone-mediated protein folding  regulation of cellular response to heat  negative regulation of Rho-dependent protein serine/threonine kinase activity  
NDEx NetworkCHORDC1
Atlas of Cancer Signalling NetworkCHORDC1
Wikipedia pathwaysCHORDC1
Orthology - Evolution
OrthoDB26973
GeneTree (enSembl)ENSG00000110172
Phylogenetic Trees/Animal Genes : TreeFamCHORDC1
HOVERGENQ9UHD1
HOGENOMQ9UHD1
Homologs : HomoloGeneCHORDC1
Homology/Alignments : Family Browser (UCSC)CHORDC1
Gene fusions - Rearrangements
Fusion : QuiverCHORDC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHORDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHORDC1
dbVarCHORDC1
ClinVarCHORDC1
1000_GenomesCHORDC1 
Exome Variant ServerCHORDC1
ExAC (Exome Aggregation Consortium)ENSG00000110172
GNOMAD BrowserENSG00000110172
Genetic variants : HAPMAP26973
Genomic Variants (DGV)CHORDC1 [DGVbeta]
DECIPHERCHORDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHORDC1 
Mutations
ICGC Data PortalCHORDC1 
TCGA Data PortalCHORDC1 
Broad Tumor PortalCHORDC1
OASIS PortalCHORDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHORDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHORDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHORDC1
DgiDB (Drug Gene Interaction Database)CHORDC1
DoCM (Curated mutations)CHORDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHORDC1 (select a term)
intoGenCHORDC1
Cancer3DCHORDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604353   
Orphanet
DisGeNETCHORDC1
MedgenCHORDC1
Genetic Testing Registry CHORDC1
NextProtQ9UHD1 [Medical]
TSGene26973
GENETestsCHORDC1
Target ValidationCHORDC1
Huge Navigator CHORDC1 [HugePedia]
snp3D : Map Gene to Disease26973
BioCentury BCIQCHORDC1
ClinGenCHORDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26973
Chemical/Pharm GKB GenePA26476
Clinical trialCHORDC1
Miscellaneous
canSAR (ICR)CHORDC1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHORDC1
EVEXCHORDC1
GoPubMedCHORDC1
iHOPCHORDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:19:24 CEST 2018
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