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CHP1 (calcineurin like EF-hand protein 1)

Identity

Alias_symbol (synonym)Sid470p
CHP
SLC9A1BP
p22
p24
Other alias
HGNC (Hugo) CHP1
LocusID (NCBI) 11261
Atlas_Id 50667
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41523437 and ends at 41574083 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHP1   17433
Cards
Entrez_Gene (NCBI)CHP1  11261  calcineurin like EF-hand protein 1
AliasesCHP; SLC9A1BP; Sid470p; p22; 
p24
GeneCards (Weizmann)CHP1
Ensembl hg19 (Hinxton)ENSG00000187446 [Gene_View]  chr15:41523437-41574083 [Contig_View]  CHP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187446 [Gene_View]  chr15:41523437-41574083 [Contig_View]  CHP1 [Vega]
ICGC DataPortalENSG00000187446
TCGA cBioPortalCHP1
AceView (NCBI)CHP1
Genatlas (Paris)CHP1
WikiGenes11261
SOURCE (Princeton)CHP1
Genetics Home Reference (NIH)CHP1
Genomic and cartography
GoldenPath hg19 (UCSC)CHP1  -     chr15:41523437-41574083 +  15q15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHP1  -     15q15.1   [Description]    (hg38-Dec_2013)
EnsemblCHP1 - 15q15.1 [CytoView hg19]  CHP1 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBICHP1 [Mapview hg19]  CHP1 [Mapview hg38]
OMIM606988   
Gene and transcription
Genbank (Entrez)AK000095 AK094363 AK299660 AK307060 AK312582
RefSeq transcript (Entrez)NM_007236
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)CHP1
Cluster EST : UnigeneHs.745372 [ NCBI ]
CGAP (NCI)Hs.745372
Alternative Splicing GalleryENSG00000187446
Gene ExpressionCHP1 [ NCBI-GEO ]   CHP1 [ EBI - ARRAY_EXPRESS ]   CHP1 [ SEEK ]   CHP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11261
GTEX Portal (Tissue expression)CHP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99653   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99653  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99653
Splice isoforms : SwissVarQ99653
PhosPhoSitePlusQ99653
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CHP1
DMDM Disease mutations11261
Blocks (Seattle)CHP1
PDB (SRS)2.00E+30   
PDB (PDBSum)2.00E+30   
PDB (IMB)2.00E+30   
PDB (RSDB)2.00E+30   
Structural Biology KnowledgeBase2.00E+30   
SCOP (Structural Classification of Proteins)2.00E+30   
CATH (Classification of proteins structures)2.00E+30   
SuperfamilyQ99653
Human Protein AtlasENSG00000187446
Peptide AtlasQ99653
HPRD06101
IPIIPI00218924   IPI00908436   
Protein Interaction databases
DIP (DOE-UCLA)Q99653
IntAct (EBI)Q99653
FunCoupENSG00000187446
BioGRIDCHP1
STRING (EMBL)CHP1
ZODIACCHP1
Ontologies - Pathways
QuickGOQ99653
Ontology : AmiGOGolgi membrane  microtubule bundle formation  negative regulation of protein phosphorylation  protein kinase inhibitor activity  transporter activity  calcium ion binding  protein binding  nucleus  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  plasma membrane  plasma membrane  focal adhesion  negative regulation of protein kinase activity  protein export from nucleus  potassium ion transport  small GTPase mediated signal transduction  microtubule binding  negative regulation of phosphatase activity  potassium channel regulator activity  microtubule cytoskeleton  calcium ion regulated exocytosis  kinase binding  membrane docking  transport vesicle  hyaluronan catabolic process  cytoplasmic microtubule organization  negative regulation of protein ubiquitination  negative regulation of protein autophosphorylation  negative regulation of NF-kappaB transcription factor activity  positive regulation of sodium:proton antiporter activity  positive regulation of sodium:proton antiporter activity  negative regulation of protein import into nucleus  calcium-dependent protein binding  protein stabilization  positive regulation of protein transport  protein oligomerization  regulation of intracellular pH  positive regulation of protein glycosylation  membrane organization  membrane fusion  extracellular exosome  negative regulation of calcineurin-NFAT signaling cascade  cellular response to acidic pH  positive regulation of protein targeting to membrane  regulation of neuron death  
Ontology : EGO-EBIGolgi membrane  microtubule bundle formation  negative regulation of protein phosphorylation  protein kinase inhibitor activity  transporter activity  calcium ion binding  protein binding  nucleus  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  plasma membrane  plasma membrane  focal adhesion  negative regulation of protein kinase activity  protein export from nucleus  potassium ion transport  small GTPase mediated signal transduction  microtubule binding  negative regulation of phosphatase activity  potassium channel regulator activity  microtubule cytoskeleton  calcium ion regulated exocytosis  kinase binding  membrane docking  transport vesicle  hyaluronan catabolic process  cytoplasmic microtubule organization  negative regulation of protein ubiquitination  negative regulation of protein autophosphorylation  negative regulation of NF-kappaB transcription factor activity  positive regulation of sodium:proton antiporter activity  positive regulation of sodium:proton antiporter activity  negative regulation of protein import into nucleus  calcium-dependent protein binding  protein stabilization  positive regulation of protein transport  protein oligomerization  regulation of intracellular pH  positive regulation of protein glycosylation  membrane organization  membrane fusion  extracellular exosome  negative regulation of calcineurin-NFAT signaling cascade  cellular response to acidic pH  positive regulation of protein targeting to membrane  regulation of neuron death  
NDEx NetworkCHP1
Atlas of Cancer Signalling NetworkCHP1
Wikipedia pathwaysCHP1
Orthology - Evolution
OrthoDB11261
GeneTree (enSembl)ENSG00000187446
Phylogenetic Trees/Animal Genes : TreeFamCHP1
HOVERGENQ99653
HOGENOMQ99653
Homologs : HomoloGeneCHP1
Homology/Alignments : Family Browser (UCSC)CHP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHP1
dbVarCHP1
ClinVarCHP1
1000_GenomesCHP1 
Exome Variant ServerCHP1
ExAC (Exome Aggregation Consortium)CHP1 (select the gene name)
Genetic variants : HAPMAP11261
Genomic Variants (DGV)CHP1 [DGVbeta]
DECIPHER (Syndromes)15:41523437-41574083  ENSG00000187446
CONAN: Copy Number AnalysisCHP1 
Mutations
ICGC Data PortalCHP1 
TCGA Data PortalCHP1 
Broad Tumor PortalCHP1
OASIS PortalCHP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCHP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHP1
DgiDB (Drug Gene Interaction Database)CHP1
DoCM (Curated mutations)CHP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHP1 (select a term)
intoGenCHP1
Cancer3DCHP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606988   
Orphanet
MedgenCHP1
Genetic Testing Registry CHP1
NextProtQ99653 [Medical]
TSGene11261
GENETestsCHP1
Huge Navigator CHP1 [HugePedia]
snp3D : Map Gene to Disease11261
BioCentury BCIQCHP1
ClinGenCHP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11261
Clinical trialCHP1
Miscellaneous
canSAR (ICR)CHP1 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHP1
EVEXCHP1
GoPubMedCHP1
iHOPCHP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:26 CET 2017

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