Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHP2 (calcineurin like EF-hand protein 2)

Identity

Other alias-
HGNC (Hugo) CHP2
LocusID (NCBI) 63928
Atlas_Id 41182
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 23754627 and ends at 23758951 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPSM2 (1p13.3) / CHP2 (16p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHP2   24927
Cards
Entrez_Gene (NCBI)CHP2  63928  calcineurin like EF-hand protein 2
Aliases
GeneCards (Weizmann)CHP2
Ensembl hg19 (Hinxton)ENSG00000166869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166869 [Gene_View]  chr16:23754627-23758951 [Contig_View]  CHP2 [Vega]
ICGC DataPortalENSG00000166869
TCGA cBioPortalCHP2
AceView (NCBI)CHP2
Genatlas (Paris)CHP2
WikiGenes63928
SOURCE (Princeton)CHP2
Genetics Home Reference (NIH)CHP2
Genomic and cartography
GoldenPath hg38 (UCSC)CHP2  -     chr16:23754627-23758951 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHP2  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblCHP2 - 16p12.2 [CytoView hg19]  CHP2 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBICHP2 [Mapview hg19]  CHP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF146019 AK290253 AK313062 BC152866 BF197519
RefSeq transcript (Entrez)NM_022097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHP2
Cluster EST : UnigeneHs.178589 [ NCBI ]
CGAP (NCI)Hs.178589
Alternative Splicing GalleryENSG00000166869
Gene ExpressionCHP2 [ NCBI-GEO ]   CHP2 [ EBI - ARRAY_EXPRESS ]   CHP2 [ SEEK ]   CHP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CHP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63928
GTEX Portal (Tissue expression)CHP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43745   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43745  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43745
Splice isoforms : SwissVarO43745
PhosPhoSitePlusO43745
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13202    pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CHP2
DMDM Disease mutations63928
Blocks (Seattle)CHP2
PDB (SRS)2BEC   
PDB (PDBSum)2BEC   
PDB (IMB)2BEC   
PDB (RSDB)2BEC   
Structural Biology KnowledgeBase2BEC   
SCOP (Structural Classification of Proteins)2BEC   
CATH (Classification of proteins structures)2BEC   
SuperfamilyO43745
Human Protein AtlasENSG00000166869
Peptide AtlasO43745
HPRD14259
IPIIPI00219584   
Protein Interaction databases
DIP (DOE-UCLA)O43745
IntAct (EBI)O43745
FunCoupENSG00000166869
BioGRIDCHP2
STRING (EMBL)CHP2
ZODIACCHP2
Ontologies - Pathways
QuickGOO43745
Ontology : AmiGOcalcium ion binding  protein binding  nucleus  cytoplasm  plasma membrane  positive regulation of cell proliferation  positive regulation of phosphatase activity  protein transport  positive regulation of protein import into nucleus  positive regulation of transcription from RNA polymerase II promoter  positive regulation of calcineurin-NFAT signaling cascade  cellular response to calcium ion  
Ontology : EGO-EBIcalcium ion binding  protein binding  nucleus  cytoplasm  plasma membrane  positive regulation of cell proliferation  positive regulation of phosphatase activity  protein transport  positive regulation of protein import into nucleus  positive regulation of transcription from RNA polymerase II promoter  positive regulation of calcineurin-NFAT signaling cascade  cellular response to calcium ion  
NDEx NetworkCHP2
Atlas of Cancer Signalling NetworkCHP2
Wikipedia pathwaysCHP2
Orthology - Evolution
OrthoDB63928
GeneTree (enSembl)ENSG00000166869
Phylogenetic Trees/Animal Genes : TreeFamCHP2
HOVERGENO43745
HOGENOMO43745
Homologs : HomoloGeneCHP2
Homology/Alignments : Family Browser (UCSC)CHP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHP2
dbVarCHP2
ClinVarCHP2
1000_GenomesCHP2 
Exome Variant ServerCHP2
ExAC (Exome Aggregation Consortium)CHP2 (select the gene name)
Genetic variants : HAPMAP63928
Genomic Variants (DGV)CHP2 [DGVbeta]
DECIPHERCHP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHP2 
Mutations
ICGC Data PortalCHP2 
TCGA Data PortalCHP2 
Broad Tumor PortalCHP2
OASIS PortalCHP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHP2
DgiDB (Drug Gene Interaction Database)CHP2
DoCM (Curated mutations)CHP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHP2 (select a term)
intoGenCHP2
Cancer3DCHP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCHP2
Genetic Testing Registry CHP2
NextProtO43745 [Medical]
TSGene63928
GENETestsCHP2
Target ValidationCHP2
Huge Navigator CHP2 [HugePedia]
snp3D : Map Gene to Disease63928
BioCentury BCIQCHP2
ClinGenCHP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63928
Chemical/Pharm GKB GenePA166048964
Clinical trialCHP2
Miscellaneous
canSAR (ICR)CHP2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHP2
EVEXCHP2
GoPubMedCHP2
iHOPCHP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:50 CEST 2017

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