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CHPF (chondroitin polymerizing factor)

Identity

Alias_symbol (synonym)CSS2
CHSY2
Other alias
HGNC (Hugo) CHPF
LocusID (NCBI) 79586
Atlas_Id 52317
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219538947 and ends at 219543097 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHPF   24291
Cards
Entrez_Gene (NCBI)CHPF  79586  chondroitin polymerizing factor
AliasesCHSY2; CSS2
GeneCards (Weizmann)CHPF
Ensembl hg19 (Hinxton)ENSG00000123989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123989 [Gene_View]  chr2:219538947-219543097 [Contig_View]  CHPF [Vega]
ICGC DataPortalENSG00000123989
TCGA cBioPortalCHPF
AceView (NCBI)CHPF
Genatlas (Paris)CHPF
WikiGenes79586
SOURCE (Princeton)CHPF
Genetics Home Reference (NIH)CHPF
Genomic and cartography
GoldenPath hg38 (UCSC)CHPF  -     chr2:219538947-219543097 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHPF  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblCHPF - 2q35 [CytoView hg19]  CHPF - 2q35 [CytoView hg38]
Mapping of homologs : NCBICHPF [Mapview hg19]  CHPF [Mapview hg38]
OMIM610405   
Gene and transcription
Genbank (Entrez)AB086063 AB095813 AK026331 AK302124 AL136814
RefSeq transcript (Entrez)NM_001195731 NM_024536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHPF
Cluster EST : UnigeneHs.516711 [ NCBI ]
CGAP (NCI)Hs.516711
Alternative Splicing GalleryENSG00000123989
Gene ExpressionCHPF [ NCBI-GEO ]   CHPF [ EBI - ARRAY_EXPRESS ]   CHPF [ SEEK ]   CHPF [ MEM ]
Gene Expression Viewer (FireBrowse)CHPF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79586
GTEX Portal (Tissue expression)CHPF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ52
Splice isoforms : SwissVarQ8IZ52
Catalytic activity : Enzyme2.4.1.175 [ Enzyme-Expasy ]   2.4.1.1752.4.1.175 [ IntEnz-EBI ]   2.4.1.175 [ BRENDA ]   2.4.1.175 [ KEGG ]   
PhosPhoSitePlusQ8IZ52
Domains : Interpro (EBI)Chond_GalNAc   
Domain families : Pfam (Sanger)CHGN (PF05679)   
Domain families : Pfam (NCBI)pfam05679   
Conserved Domain (NCBI)CHPF
DMDM Disease mutations79586
Blocks (Seattle)CHPF
SuperfamilyQ8IZ52
Human Protein AtlasENSG00000123989
Peptide AtlasQ8IZ52
HPRD10829
IPIIPI00465319   IPI00976127   IPI00853298   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ52
IntAct (EBI)Q8IZ52
FunCoupENSG00000123989
BioGRIDCHPF
STRING (EMBL)CHPF
ZODIACCHPF
Ontologies - Pathways
QuickGOQ8IZ52
Ontology : AmiGOGolgi membrane  mitochondrial matrix  cytosol  integral component of membrane  chondroitin sulfate biosynthetic process  Golgi cisterna membrane  metal ion binding  glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity  
Ontology : EGO-EBIGolgi membrane  mitochondrial matrix  cytosol  integral component of membrane  chondroitin sulfate biosynthetic process  Golgi cisterna membrane  metal ion binding  glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHPF
Atlas of Cancer Signalling NetworkCHPF
Wikipedia pathwaysCHPF
Orthology - Evolution
OrthoDB79586
GeneTree (enSembl)ENSG00000123989
Phylogenetic Trees/Animal Genes : TreeFamCHPF
HOVERGENQ8IZ52
HOGENOMQ8IZ52
Homologs : HomoloGeneCHPF
Homology/Alignments : Family Browser (UCSC)CHPF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHPF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHPF
dbVarCHPF
ClinVarCHPF
1000_GenomesCHPF 
Exome Variant ServerCHPF
ExAC (Exome Aggregation Consortium)CHPF (select the gene name)
Genetic variants : HAPMAP79586
Genomic Variants (DGV)CHPF [DGVbeta]
DECIPHERCHPF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHPF 
Mutations
ICGC Data PortalCHPF 
TCGA Data PortalCHPF 
Broad Tumor PortalCHPF
OASIS PortalCHPF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHPF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHPF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHPF
DgiDB (Drug Gene Interaction Database)CHPF
DoCM (Curated mutations)CHPF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHPF (select a term)
intoGenCHPF
Cancer3DCHPF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610405   
Orphanet
MedgenCHPF
Genetic Testing Registry CHPF
NextProtQ8IZ52 [Medical]
TSGene79586
GENETestsCHPF
Target ValidationCHPF
Huge Navigator CHPF [HugePedia]
snp3D : Map Gene to Disease79586
BioCentury BCIQCHPF
ClinGenCHPF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79586
Chemical/Pharm GKB GenePA162382245
Clinical trialCHPF
Miscellaneous
canSAR (ICR)CHPF (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHPF
EVEXCHPF
GoPubMedCHPF
iHOPCHPF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:20 CEST 2017

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