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CHPF2 (chondroitin polymerizing factor 2)

Identity

Alias_symbol (synonym)KIAA1402
ChSy-3
CSGlcA-T
Other aliasCSGLCA-T
CSGlcAT
chPF-2
HGNC (Hugo) CHPF2
LocusID (NCBI) 54480
Atlas_Id 52307
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151232489 and ends at 151238827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHPF2 (7q36.1) / CHPF2 (7q36.1)CHPF2 (7q36.1) / IRS2 (13q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHPF2   29270
Cards
Entrez_Gene (NCBI)CHPF2  54480  chondroitin polymerizing factor 2
AliasesCSGLCA-T; CSGlcAT; ChSy-3; chPF-2
GeneCards (Weizmann)CHPF2
Ensembl hg19 (Hinxton)ENSG00000033100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000033100 [Gene_View]  chr7:151232489-151238827 [Contig_View]  CHPF2 [Vega]
ICGC DataPortalENSG00000033100
TCGA cBioPortalCHPF2
AceView (NCBI)CHPF2
Genatlas (Paris)CHPF2
WikiGenes54480
SOURCE (Princeton)CHPF2
Genetics Home Reference (NIH)CHPF2
Genomic and cartography
GoldenPath hg38 (UCSC)CHPF2  -     chr7:151232489-151238827 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHPF2  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblCHPF2 - 7q36.1 [CytoView hg19]  CHPF2 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBICHPF2 [Mapview hg19]  CHPF2 [Mapview hg38]
OMIM608037   
Gene and transcription
Genbank (Entrez)AB037823 AB095812 AI191668 AK025885 AK025897
RefSeq transcript (Entrez)NM_001284295 NM_019015
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHPF2
Cluster EST : UnigeneHs.647084 [ NCBI ]
CGAP (NCI)Hs.647084
Alternative Splicing GalleryENSG00000033100
Gene ExpressionCHPF2 [ NCBI-GEO ]   CHPF2 [ EBI - ARRAY_EXPRESS ]   CHPF2 [ SEEK ]   CHPF2 [ MEM ]
Gene Expression Viewer (FireBrowse)CHPF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54480
GTEX Portal (Tissue expression)CHPF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2E5
Splice isoforms : SwissVarQ9P2E5
Catalytic activity : Enzyme2.4.1.226 [ Enzyme-Expasy ]   2.4.1.2262.4.1.226 [ IntEnz-EBI ]   2.4.1.226 [ BRENDA ]   2.4.1.226 [ KEGG ]   
PhosPhoSitePlusQ9P2E5
Domains : Interpro (EBI)Chond_GalNAc   
Domain families : Pfam (Sanger)CHGN (PF05679)   
Domain families : Pfam (NCBI)pfam05679   
Conserved Domain (NCBI)CHPF2
DMDM Disease mutations54480
Blocks (Seattle)CHPF2
SuperfamilyQ9P2E5
Human Protein AtlasENSG00000033100
Peptide AtlasQ9P2E5
HPRD10474
IPIIPI00018606   IPI00551043   IPI00945406   IPI00945611   IPI00945773   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2E5
IntAct (EBI)Q9P2E5
FunCoupENSG00000033100
BioGRIDCHPF2
STRING (EMBL)CHPF2
ZODIACCHPF2
Ontologies - Pathways
QuickGOQ9P2E5
Ontology : AmiGOGolgi membrane  acetylgalactosaminyltransferase activity  membrane  integral component of membrane  chondroitin sulfate biosynthetic process  Golgi cisterna membrane  N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity  
Ontology : EGO-EBIGolgi membrane  acetylgalactosaminyltransferase activity  membrane  integral component of membrane  chondroitin sulfate biosynthetic process  Golgi cisterna membrane  N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHPF2
Atlas of Cancer Signalling NetworkCHPF2
Wikipedia pathwaysCHPF2
Orthology - Evolution
OrthoDB54480
GeneTree (enSembl)ENSG00000033100
Phylogenetic Trees/Animal Genes : TreeFamCHPF2
HOVERGENQ9P2E5
HOGENOMQ9P2E5
Homologs : HomoloGeneCHPF2
Homology/Alignments : Family Browser (UCSC)CHPF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHPF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHPF2
dbVarCHPF2
ClinVarCHPF2
1000_GenomesCHPF2 
Exome Variant ServerCHPF2
ExAC (Exome Aggregation Consortium)CHPF2 (select the gene name)
Genetic variants : HAPMAP54480
Genomic Variants (DGV)CHPF2 [DGVbeta]
DECIPHERCHPF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHPF2 
Mutations
ICGC Data PortalCHPF2 
TCGA Data PortalCHPF2 
Broad Tumor PortalCHPF2
OASIS PortalCHPF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHPF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHPF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHPF2
DgiDB (Drug Gene Interaction Database)CHPF2
DoCM (Curated mutations)CHPF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHPF2 (select a term)
intoGenCHPF2
Cancer3DCHPF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608037   
Orphanet
MedgenCHPF2
Genetic Testing Registry CHPF2
NextProtQ9P2E5 [Medical]
TSGene54480
GENETestsCHPF2
Huge Navigator CHPF2 [HugePedia]
snp3D : Map Gene to Disease54480
BioCentury BCIQCHPF2
ClinGenCHPF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54480
Chemical/Pharm GKB GenePA165617920
Clinical trialCHPF2
Miscellaneous
canSAR (ICR)CHPF2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHPF2
EVEXCHPF2
GoPubMedCHPF2
iHOPCHPF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:10:33 CEST 2017

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