Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHRAC1 (chromatin accessibility complex 1)

Identity

Alias_symbol (synonym)CHRAC15
YCL1
Other aliasCHARC1
CHARC15
CHRAC-1
CHRAC-15
HGNC (Hugo) CHRAC1
LocusID (NCBI) 54108
Atlas_Id 53912
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 140511298 and ends at 140517153 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHRAC1 (8q24.3) / C19orf68 (19q13.33)CHRAC1 (8q24.3) / SBNO1 (12q24.31)CHRAC1 (8q24.3) / SNTG1 (8q11.21)
TRPS1 (8q23.3) / CHRAC1 (8q24.3)CHRAC1 8q24.3 / SNTG1 8q11.21TRPS1 8q23.3 / CHRAC1 8q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHRAC1   13544
Cards
Entrez_Gene (NCBI)CHRAC1  54108  chromatin accessibility complex 1
AliasesCHARC1; CHARC15; CHRAC-1; CHRAC-15; 
CHRAC15; YCL1
GeneCards (Weizmann)CHRAC1
Ensembl hg19 (Hinxton)ENSG00000104472 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104472 [Gene_View]  chr8:140511298-140517153 [Contig_View]  CHRAC1 [Vega]
ICGC DataPortalENSG00000104472
TCGA cBioPortalCHRAC1
AceView (NCBI)CHRAC1
Genatlas (Paris)CHRAC1
WikiGenes54108
SOURCE (Princeton)CHRAC1
Genetics Home Reference (NIH)CHRAC1
Genomic and cartography
GoldenPath hg38 (UCSC)CHRAC1  -     chr8:140511298-140517153 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHRAC1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblCHRAC1 - 8q24.3 [CytoView hg19]  CHRAC1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBICHRAC1 [Mapview hg19]  CHRAC1 [Mapview hg38]
OMIM607268   
Gene and transcription
Genbank (Entrez)AF226076 AK023537 AK308709 AK311595 AL543044
RefSeq transcript (Entrez)NM_017444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHRAC1
Cluster EST : UnigeneHs.279704 [ NCBI ]
CGAP (NCI)Hs.279704
Alternative Splicing GalleryENSG00000104472
Gene ExpressionCHRAC1 [ NCBI-GEO ]   CHRAC1 [ EBI - ARRAY_EXPRESS ]   CHRAC1 [ SEEK ]   CHRAC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHRAC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54108
GTEX Portal (Tissue expression)CHRAC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRG0
Splice isoforms : SwissVarQ9NRG0
PhosPhoSitePlusQ9NRG0
Domains : Interpro (EBI)CBFA_NFYB_domain    Histone-fold   
Domain families : Pfam (Sanger)CBFD_NFYB_HMF (PF00808)   
Domain families : Pfam (NCBI)pfam00808   
Conserved Domain (NCBI)CHRAC1
DMDM Disease mutations54108
Blocks (Seattle)CHRAC1
SuperfamilyQ9NRG0
Human Protein AtlasENSG00000104472
Peptide AtlasQ9NRG0
HPRD06275
IPIIPI00010158   IPI00791751   IPI00982186   IPI00981611   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRG0
IntAct (EBI)Q9NRG0
FunCoupENSG00000104472
BioGRIDCHRAC1
STRING (EMBL)CHRAC1
ZODIACCHRAC1
Ontologies - Pathways
QuickGOQ9NRG0
Ontology : AmiGODNA binding  DNA-directed DNA polymerase activity  protein binding  chromatin remodeling  epsilon DNA polymerase complex  CHRAC  protein heterodimerization activity  DNA biosynthetic process  
Ontology : EGO-EBIDNA binding  DNA-directed DNA polymerase activity  protein binding  chromatin remodeling  epsilon DNA polymerase complex  CHRAC  protein heterodimerization activity  DNA biosynthetic process  
NDEx NetworkCHRAC1
Atlas of Cancer Signalling NetworkCHRAC1
Wikipedia pathwaysCHRAC1
Orthology - Evolution
OrthoDB54108
GeneTree (enSembl)ENSG00000104472
Phylogenetic Trees/Animal Genes : TreeFamCHRAC1
HOVERGENQ9NRG0
HOGENOMQ9NRG0
Homologs : HomoloGeneCHRAC1
Homology/Alignments : Family Browser (UCSC)CHRAC1
Gene fusions - Rearrangements
Fusion : MitelmanCHRAC1/SNTG1 [8q24.3/8q11.21]  
Fusion : MitelmanTRPS1/CHRAC1 [8q23.3/8q24.3]  [t(8;8)(q23;q24)]  
Fusion: TCGACHRAC1 8q24.3 SNTG1 8q11.21 BLCA
Fusion: TCGATRPS1 8q23.3 CHRAC1 8q24.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHRAC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHRAC1
dbVarCHRAC1
ClinVarCHRAC1
1000_GenomesCHRAC1 
Exome Variant ServerCHRAC1
ExAC (Exome Aggregation Consortium)CHRAC1 (select the gene name)
Genetic variants : HAPMAP54108
Genomic Variants (DGV)CHRAC1 [DGVbeta]
DECIPHERCHRAC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHRAC1 
Mutations
ICGC Data PortalCHRAC1 
TCGA Data PortalCHRAC1 
Broad Tumor PortalCHRAC1
OASIS PortalCHRAC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHRAC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHRAC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHRAC1
DgiDB (Drug Gene Interaction Database)CHRAC1
DoCM (Curated mutations)CHRAC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHRAC1 (select a term)
intoGenCHRAC1
Cancer3DCHRAC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607268   
Orphanet
MedgenCHRAC1
Genetic Testing Registry CHRAC1
NextProtQ9NRG0 [Medical]
TSGene54108
GENETestsCHRAC1
Target ValidationCHRAC1
Huge Navigator CHRAC1 [HugePedia]
snp3D : Map Gene to Disease54108
BioCentury BCIQCHRAC1
ClinGenCHRAC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54108
Chemical/Pharm GKB GenePA26481
Clinical trialCHRAC1
Miscellaneous
canSAR (ICR)CHRAC1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHRAC1
EVEXCHRAC1
GoPubMedCHRAC1
iHOPCHRAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:21 CEST 2017

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