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CHRDL1 (chordin like 1)

Identity

Other aliasCHL
MGC1
MGCN
NRLN1
VOPT
dA141H5.1
HGNC (Hugo) CHRDL1
LocusID (NCBI) 91851
Atlas_Id 56935
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110673856 and ends at 110796058 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG4B (2q37.3) / CHRDL1 (Xq23)SNX19 (11q24.3) / CHRDL1 (Xq23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHRDL1   29861
Cards
Entrez_Gene (NCBI)CHRDL1  91851  chordin like 1
AliasesCHL; MGC1; MGCN; NRLN1; 
VOPT; dA141H5.1
GeneCards (Weizmann)CHRDL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:110673856-110796058 [Contig_View]  CHRDL1 [Vega]
TCGA cBioPortalCHRDL1
AceView (NCBI)CHRDL1
Genatlas (Paris)CHRDL1
WikiGenes91851
SOURCE (Princeton)CHRDL1
Genetics Home Reference (NIH)CHRDL1
Genomic and cartography
GoldenPath hg38 (UCSC)CHRDL1  -     chrX:110673856-110796058 -  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHRDL1  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblCHRDL1 - Xq23 [CytoView hg19]  CHRDL1 - Xq23 [CytoView hg38]
Mapping of homologs : NCBICHRDL1 [Mapview hg19]  CHRDL1 [Mapview hg38]
OMIM300350   
Gene and transcription
Genbank (Entrez)AA057564 AB209548 AK092245 AK293106 AK297563
RefSeq transcript (Entrez)NM_001143981 NM_001143982 NM_001143983 NM_145234
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHRDL1
Cluster EST : UnigeneHs.496587 [ NCBI ]
CGAP (NCI)Hs.496587
Gene ExpressionCHRDL1 [ NCBI-GEO ]   CHRDL1 [ EBI - ARRAY_EXPRESS ]   CHRDL1 [ SEEK ]   CHRDL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHRDL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91851
GTEX Portal (Tissue expression)CHRDL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU40
Splice isoforms : SwissVarQ9BU40
PhosPhoSitePlusQ9BU40
Domaine pattern : Prosite (Expaxy)VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domains : Interpro (EBI)VWF_dom   
Domain families : Pfam (Sanger)VWC (PF00093)   
Domain families : Pfam (NCBI)pfam00093   
Domain families : Smart (EMBL)VWC (SM00214)  
Conserved Domain (NCBI)CHRDL1
DMDM Disease mutations91851
Blocks (Seattle)CHRDL1
SuperfamilyQ9BU40
Peptide AtlasQ9BU40
IPIIPI00478414   IPI00921319   IPI00889621   IPI01010922   IPI00945674   IPI00921287   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU40
IntAct (EBI)Q9BU40
BioGRIDCHRDL1
STRING (EMBL)CHRDL1
ZODIACCHRDL1
Ontologies - Pathways
QuickGOQ9BU40
Ontology : AmiGOossification  eye development  extracellular region  endoplasmic reticulum lumen  nervous system development  cell differentiation  BMP signaling pathway  negative regulation of BMP signaling pathway  post-translational protein modification  cellular protein metabolic process  compound eye development  
Ontology : EGO-EBIossification  eye development  extracellular region  endoplasmic reticulum lumen  nervous system development  cell differentiation  BMP signaling pathway  negative regulation of BMP signaling pathway  post-translational protein modification  cellular protein metabolic process  compound eye development  
NDEx NetworkCHRDL1
Atlas of Cancer Signalling NetworkCHRDL1
Wikipedia pathwaysCHRDL1
Orthology - Evolution
OrthoDB91851
Phylogenetic Trees/Animal Genes : TreeFamCHRDL1
HOVERGENQ9BU40
HOGENOMQ9BU40
Homologs : HomoloGeneCHRDL1
Homology/Alignments : Family Browser (UCSC)CHRDL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHRDL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHRDL1
dbVarCHRDL1
ClinVarCHRDL1
1000_GenomesCHRDL1 
Exome Variant ServerCHRDL1
ExAC (Exome Aggregation Consortium)CHRDL1 (select the gene name)
Genetic variants : HAPMAP91851
Genomic Variants (DGV)CHRDL1 [DGVbeta]
DECIPHERCHRDL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHRDL1 
Mutations
ICGC Data PortalCHRDL1 
TCGA Data PortalCHRDL1 
Broad Tumor PortalCHRDL1
OASIS PortalCHRDL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHRDL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHRDL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHRDL1
DgiDB (Drug Gene Interaction Database)CHRDL1
DoCM (Curated mutations)CHRDL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHRDL1 (select a term)
intoGenCHRDL1
Cancer3DCHRDL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300350   
Orphanet
MedgenCHRDL1
Genetic Testing Registry CHRDL1
NextProtQ9BU40 [Medical]
TSGene91851
GENETestsCHRDL1
Target ValidationCHRDL1
Huge Navigator CHRDL1 [HugePedia]
snp3D : Map Gene to Disease91851
BioCentury BCIQCHRDL1
ClinGenCHRDL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91851
Chemical/Pharm GKB GenePA134933380
Clinical trialCHRDL1
Miscellaneous
canSAR (ICR)CHRDL1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHRDL1
EVEXCHRDL1
GoPubMedCHRDL1
iHOPCHRDL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:49:50 CEST 2017

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