Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CHRM1 (cholinergic receptor muscarinic 1)

Identity

Other aliasHM1
M1
M1R
HGNC (Hugo) CHRM1
LocusID (NCBI) 1128
Atlas_Id 53220
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62908679 and ends at 62921540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYTL2 (11q14.1) / CHRM1 (11q12.3)SYTL2 11q14.1 / CHRM1 11q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q12;q14) SYTL2/CHRM1

External links

Nomenclature
HGNC (Hugo)CHRM1   1950
Cards
Entrez_Gene (NCBI)CHRM1  1128  cholinergic receptor muscarinic 1
AliasesHM1; M1; M1R
GeneCards (Weizmann)CHRM1
Ensembl hg19 (Hinxton)ENSG00000168539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168539 [Gene_View]  ENSG00000168539 [Sequence]  chr11:62908679-62921540 [Contig_View]  CHRM1 [Vega]
ICGC DataPortalENSG00000168539
TCGA cBioPortalCHRM1
AceView (NCBI)CHRM1
Genatlas (Paris)CHRM1
WikiGenes1128
SOURCE (Princeton)CHRM1
Genetics Home Reference (NIH)CHRM1
Genomic and cartography
GoldenPath hg38 (UCSC)CHRM1  -     chr11:62908679-62921540 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHRM1  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathCHRM1 - 11q12.3 [CytoView hg19]  CHRM1 - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000168539
Mapping of homologs : NCBICHRM1 [Mapview hg19]  CHRM1 [Mapview hg38]
OMIM118510   
Gene and transcription
Genbank (Entrez)AF385587 AF498915 AJ006520 AK312374 BC007740
RefSeq transcript (Entrez)NM_000738
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHRM1
Alternative Splicing GalleryENSG00000168539
Gene ExpressionCHRM1 [ NCBI-GEO ]   CHRM1 [ EBI - ARRAY_EXPRESS ]   CHRM1 [ SEEK ]   CHRM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHRM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1128
GTEX Portal (Tissue expression)CHRM1
Human Protein AtlasENSG00000168539-CHRM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11229   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11229  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11229
Splice isoforms : SwissVarP11229
PhosPhoSitePlusP11229
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Musac_Ach_M1_rcpt    Musac_Ach_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)CHRM1
DMDM Disease mutations1128
Blocks (Seattle)CHRM1
PDB (RSDB)5CXV    6OIJ   
PDB Europe5CXV    6OIJ   
PDB (PDBSum)5CXV    6OIJ   
PDB (IMB)5CXV    6OIJ   
Structural Biology KnowledgeBase5CXV    6OIJ   
SCOP (Structural Classification of Proteins)5CXV    6OIJ   
CATH (Classification of proteins structures)5CXV    6OIJ   
SuperfamilyP11229
Human Protein Atlas [tissue]ENSG00000168539-CHRM1 [tissue]
Peptide AtlasP11229
HPRD00338
IPIIPI00298980   IPI01011091   IPI01009740   
Protein Interaction databases
DIP (DOE-UCLA)P11229
IntAct (EBI)P11229
FunCoupENSG00000168539
BioGRIDCHRM1
STRING (EMBL)CHRM1
ZODIACCHRM1
Ontologies - Pathways
QuickGOP11229
Ontology : AmiGOphosphatidylinositol phospholipase C activity  G protein-coupled receptor activity  G protein-coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway  protein kinase C-activating G protein-coupled receptor signaling pathway  phospholipase C-activating G protein-coupled acetylcholine receptor signaling pathway  G protein-coupled acetylcholine receptor signaling pathway  chemical synaptic transmission  neuromuscular synaptic transmission  nervous system development  membrane  G protein-coupled acetylcholine receptor activity  cell junction  dendrite  neurotransmitter receptor activity  regulation of locomotion  positive regulation of ion transport  axon terminus  saliva secretion  cognition  regulation of postsynaptic membrane potential  regulation of glial cell proliferation  positive regulation of intracellular protein transport  G protein-coupled serotonin receptor signaling pathway  Schaffer collateral - CA1 synapse  glutamatergic synapse  cholinergic synapse  integral component of presynaptic membrane  integral component of postsynaptic density membrane  neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential  
Ontology : EGO-EBIphosphatidylinositol phospholipase C activity  G protein-coupled receptor activity  G protein-coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway  protein kinase C-activating G protein-coupled receptor signaling pathway  phospholipase C-activating G protein-coupled acetylcholine receptor signaling pathway  G protein-coupled acetylcholine receptor signaling pathway  chemical synaptic transmission  neuromuscular synaptic transmission  nervous system development  membrane  G protein-coupled acetylcholine receptor activity  cell junction  dendrite  neurotransmitter receptor activity  regulation of locomotion  positive regulation of ion transport  axon terminus  saliva secretion  cognition  regulation of postsynaptic membrane potential  regulation of glial cell proliferation  positive regulation of intracellular protein transport  G protein-coupled serotonin receptor signaling pathway  Schaffer collateral - CA1 synapse  glutamatergic synapse  cholinergic synapse  integral component of presynaptic membrane  integral component of postsynaptic density membrane  neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction    PI3K-Akt signaling pathway    Cholinergic synapse    Regulation of actin cytoskeleton   
NDEx NetworkCHRM1
Atlas of Cancer Signalling NetworkCHRM1
Wikipedia pathwaysCHRM1
Orthology - Evolution
OrthoDB1128
GeneTree (enSembl)ENSG00000168539
Phylogenetic Trees/Animal Genes : TreeFamCHRM1
HOGENOMP11229
Homologs : HomoloGeneCHRM1
Homology/Alignments : Family Browser (UCSC)CHRM1
Gene fusions - Rearrangements
Fusion : MitelmanSYTL2/CHRM1 [11q14.1/11q12.3]  [t(11;11)(q12;q14)]  
Fusion PortalSYTL2 11q14.1 CHRM1 11q12.3 BRCA
Fusion : QuiverCHRM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHRM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHRM1
dbVarCHRM1
ClinVarCHRM1
1000_GenomesCHRM1 
Exome Variant ServerCHRM1
ExAC (Exome Aggregation Consortium)ENSG00000168539
GNOMAD BrowserENSG00000168539
Varsome BrowserCHRM1
Genetic variants : HAPMAP1128
Genomic Variants (DGV)CHRM1 [DGVbeta]
DECIPHERCHRM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHRM1 
Mutations
ICGC Data PortalCHRM1 
TCGA Data PortalCHRM1 
Broad Tumor PortalCHRM1
OASIS PortalCHRM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHRM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHRM1
Mutations and Diseases : HGMDCHRM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHRM1
DgiDB (Drug Gene Interaction Database)CHRM1
DoCM (Curated mutations)CHRM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHRM1 (select a term)
intoGenCHRM1
Cancer3DCHRM1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118510   
Orphanet
DisGeNETCHRM1
MedgenCHRM1
Genetic Testing Registry CHRM1
NextProtP11229 [Medical]
TSGene1128
GENETestsCHRM1
Target ValidationCHRM1
Huge Navigator CHRM1 [HugePedia]
snp3D : Map Gene to Disease1128
BioCentury BCIQCHRM1
ClinGenCHRM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1128
Chemical/Pharm GKB GenePA26484
Clinical trialCHRM1
Miscellaneous
canSAR (ICR)CHRM1 (select the gene name)
HarmonizomeCHRM1
DataMed IndexCHRM1
Probes
Litterature
PubMed117 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHRM1
EVEXCHRM1
GoPubMedCHRM1
iHOPCHRM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 10 12:10:27 CEST 2020
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